Gene Sfum_1261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1261 
Symbol 
ID4460688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1558390 
End bp1559559 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content62% 
IMG OID639702030 
ProductDNA repair photolyase-like 
Protein accessionYP_845388 
Protein GI116748701 
COG category[L] Replication, recombination and repair 
COG ID[COG1533] DNA repair photolyase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.288369 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCCGGG TTGCAGGAAA TGAACGGGGA CGGCCCTGCC GTCGACGAAA GAGGTCTGTG 
TCCGAATCCA TGAAATCCAT GGCCCTCAAG CCGCCCGGAA GAATCGTGAT CGAAGCGGAC
GTCGCCCATA GCCCGCTGGT TGAAACCCTG AGACGAAACC TGCCCCACGC CGGGGTGAGC
GTCGTGGACC GCGTGCAGGA GAAGGCCGTC CACGATCCGG ATGTGCTGGA AGTGGTCCGG
TTCAGGGGCC GGTTCCTCAA ATCCTGCCCC GGAACCCGCC AGTACAACTG CTGCGGGTAT
CGCATCCTCC ACTTCGGCCT GCAGTGTTCG CTGGACTGCA CCTACTGCAT CCTGCAGGCC
TATCTCAATC AGCCGAACCT GAGGCTTTTC GGGAACACCG ATGATCTCTT CGAGGAGCTC
GCGGCGGAAA TCGACACGCA TCCCGGACAG CTCTACCGGA TCGGGACCGG GGAATTCACG
GATTCGCTTC TGCTGGACCC GTGGACCGGC TTTTCCCGGC CGACGGTACG GTTTTTTGCC
TCGCGCGCCA ACGCCGTCCT CGAGCTGAAG ACGAAAACCG ATTACATTGG AAATCTTCGG
GACCTGGATC ATCGTGGACA CACCATCGTG GCGTGGTCCC TCAACGCCGA AAGCGTGCGT
TGGCGCGAAG AAACCAAATC GGCCACGCTG CGGCAGCGCT TCGACGCCGC GCGAACCTGC
GCCGAGCTTG GATACGCCCT GGCTTTCCAT TTCGACCCGA TGCTCGAATT TCCTCGCTGG
AAAGAAGAGT ACGGCGAGAC GCTGGCGCGG TTGTTCGACG CGGTCGACCC GGCGCGCGTC
GTGTGGATCA GCCTCGGCGC CTTCCGGTTC ATGCCGGAGC TCAAGTCCTC CATCCGTTCC
AGGCATCCCG ACAGCCGCAT CACCTGCGGT GAATTCATCC CGGGGCTCGA CGGAAAGATG
CGCTACTTCA GGGACATACG TGTGGAGATG TATTCTTTCA TGGTGGATCG CATCCGGGCG
TTCGATCCCG AGCTGTGCAC GTACCTGTGC ATGGAGGGAA ACGACATCTG GCGGGACGCC
TTCGGTTTCA CGCCGGCCGA GCGGGGCGGT CTGGGTGCGA TGCTCGACCG GGCCGTGCTC
CAGCGGATGA AAGTCGGGGC GACCTTCTGA
 
Protein sequence
MSRVAGNERG RPCRRRKRSV SESMKSMALK PPGRIVIEAD VAHSPLVETL RRNLPHAGVS 
VVDRVQEKAV HDPDVLEVVR FRGRFLKSCP GTRQYNCCGY RILHFGLQCS LDCTYCILQA
YLNQPNLRLF GNTDDLFEEL AAEIDTHPGQ LYRIGTGEFT DSLLLDPWTG FSRPTVRFFA
SRANAVLELK TKTDYIGNLR DLDHRGHTIV AWSLNAESVR WREETKSATL RQRFDAARTC
AELGYALAFH FDPMLEFPRW KEEYGETLAR LFDAVDPARV VWISLGAFRF MPELKSSIRS
RHPDSRITCG EFIPGLDGKM RYFRDIRVEM YSFMVDRIRA FDPELCTYLC MEGNDIWRDA
FGFTPAERGG LGAMLDRAVL QRMKVGATF