Gene Sfum_1240 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1240 
Symbol 
ID4461365 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1535655 
End bp1535999 
Gene Length345 bp 
Protein Length114 aa 
Translation table11 
GC content57% 
IMG OID639702008 
Productpreprotein translocase, YajC subunit 
Protein accessionYP_845367 
Protein GI116748680 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1862] Preprotein translocase subunit YajC 
TIGRFAM ID[TIGR00739] preprotein translocase, YajC subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.659198 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTGA CCGGTATTGC TTATGCAATG GGCACGACTG GCCAGGGCGG CGCCGCGGAA 
GGCGCAGGCG GCGGTCTGGC GGCTTTCGCA CCATTGATCA TCATGGTCGC GATTTTCTAC
TTTCTCCTGA TCAGGCCTCA GCAAAAGAAA CAGAAAGAAC ACCGGGCCAT GCTGGGCAAC
CTGAAAAAGG ACGACGTCGT CCTCACGCAA GGAGGACTGC AGGGCAAGAT CACCGGTTTG
ACCGACACGG TGGCGACTAT CGAAATTGCC GACAAGGTTC GAGTCAAGGT GCACAGAGGA
TACATCGCGG CCTTGATTTC CAAGGGTGAG ACTCCCGCCG AATAG
 
Protein sequence
MDLTGIAYAM GTTGQGGAAE GAGGGLAAFA PLIIMVAIFY FLLIRPQQKK QKEHRAMLGN 
LKKDDVVLTQ GGLQGKITGL TDTVATIEIA DKVRVKVHRG YIAALISKGE TPAE