| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1239 |
|---|
| Symbol | |
|---|
| ID | 4461364 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 1533859 |
|---|
| End bp | 1535460 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639702007 |
|---|
| Product | protein-export membrane protein SecD |
|---|
| Protein accession | YP_845366 |
|---|
| Protein GI | 116748679 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCAATC TTAAATGGCG AGCACTTCTT GTGGTTGTGG TCCTCATTGT GGGGGTCGTT
TATCTGGTGC CGACTTTCGT CTCGACCTTG CCTCCGGGAT GGAGCAAATT CTTGCCGAAA
GACAAGATCA GACTGGGACT CGATCTCCAG GGCGGCATGC ATCTCATCCT GGAGGTTGAA
GCGGACCAAG CGGTGAGCAA CACTGCGACG CGCTTGGCCG AGGACCTCAA GGACGCTTTC
CGGAAAGAGA AGATTGCGTT CAACAAGATC GACAAGACCG GCAAGTGGGA TATAGAGGTT
CAGCTCCCGG GGACCGAGCA GCAGAGTCAA ATCGGCCCGC TCGTGGAGAA AGAATTTCCC
ACACTGAAAT GGGTCAGCGC CGAAACGCAG CCCGAAGGAA CCGTCAAGGT CATGCTGACG
GTCCACGAGA AAGAAGTGGA ACGGGTCCAG AAGGCGGCCA TAGCCCAGGG TCTGGAGACC
ATACGCAATC GCATCGATCA GTTCGGCGTC AGCGAACCGG ACATCAGGCC GCAGGGCGAG
GATCGCATCC TGGTGCAGCT GCCCGGCATT CAAGACCCGC AGCGCGCCGT GGAACTTATC
GGCAAGACGG CCCAACTGGA ATTCAAGCTG GTGGCGGAGG GCGTGAGCCC TCAGGACGTG
AAGTCGGGCA AGGCGCCGGC GGGGACCAAA ATCTATCCCA TGAAGCACAC GGACCGGACA
ACCCGGCAGA GGACGGAAAG TCAAATCGTG CTCAACGACC GGACCCTCAT GAGCGGCGAA
TACATCACCA ACGCCCAGGT GGAAATCGAC CGCCAGCACA GCAGTTCATA TGTCGCCCTG
GATTTCGACG CCCAGGGGGC CAAGTTGTTT GAAAAGATCA CTGAAGCCAA CGTGAAGAAG
CAGCTTGCCA TCGTGCTGGA CGGGGTCGTC TACTCCGCTC CGGTCATCCA GGAGACCATC
GGCGGCGGCA AGGCGACCAT CACGGGATCA TTCACCGACC AGGAAGCTCG CGATCTGGCC
ATCGTGCTGA GAGCGGGTGC GCTTCCCGCG CCGGTGAAGA TCCTCGAGCA AAGGACGGTC
GGGCCTTCCC TTGGGGCCGA TTCGATCAAC AAGGGGGTGC TTGCATCCAT CGTGGGCGGC
ATCGGAACCA TTCTTTTCAT GCTCATCTAT TACCGGTTCG GAGGTGTCGT GGCCGACCTC
GCCCTGGCGC TCAACGTGCT CCTGGTGCTG GCGGGCATGG CGGCGTTCGG GTTCACCCTG
ACGCTGCCCG GCATTGCGGG TATCGCCCTC ACCATCGGCA TGGCCGTCGA CGCGAACGTA
CTCATCTATG AACGAATACG GGAAGAACTG CGATTGGGCA AGACGCCGCG GGCAGCCTTG
GAAACGGGCT ATGACAGGGC TACCTTGACG ATTCTCGATG CGAACGTCAC CACCATCATC
GCCGCCCTGG TGCTGCTCCA GTTCGGCACC GGTCCCGTGA GGGGATTCGC GGTCACCCTG
ACCGTGGGTT TGGCGGCCAA CATGTTTACG GCGATCTTCG TCACGCGCGT CATCTTTGAC
TACCTTCTCG TCCAGCGGCG GATCAAAACT CTGAGCATCT AG
|
|---|
| Protein sequence | MSNLKWRALL VVVVLIVGVV YLVPTFVSTL PPGWSKFLPK DKIRLGLDLQ GGMHLILEVE
ADQAVSNTAT RLAEDLKDAF RKEKIAFNKI DKTGKWDIEV QLPGTEQQSQ IGPLVEKEFP
TLKWVSAETQ PEGTVKVMLT VHEKEVERVQ KAAIAQGLET IRNRIDQFGV SEPDIRPQGE
DRILVQLPGI QDPQRAVELI GKTAQLEFKL VAEGVSPQDV KSGKAPAGTK IYPMKHTDRT
TRQRTESQIV LNDRTLMSGE YITNAQVEID RQHSSSYVAL DFDAQGAKLF EKITEANVKK
QLAIVLDGVV YSAPVIQETI GGGKATITGS FTDQEARDLA IVLRAGALPA PVKILEQRTV
GPSLGADSIN KGVLASIVGG IGTILFMLIY YRFGGVVADL ALALNVLLVL AGMAAFGFTL
TLPGIAGIAL TIGMAVDANV LIYERIREEL RLGKTPRAAL ETGYDRATLT ILDANVTTII
AALVLLQFGT GPVRGFAVTL TVGLAANMFT AIFVTRVIFD YLLVQRRIKT LSI
|
|---|
| |