Gene Sfum_1164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_1164 
Symbol 
ID4460242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1443951 
End bp1445456 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content57% 
IMG OID639701931 
Productsigma-54 dependent trancsriptional regulator 
Protein accessionYP_845292 
Protein GI116748605 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.245431 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTAAGTA GGCTCAATCC TTGCTTTTCC GCCATGGCGA AAACGGAAGG TTCGGCGAAT 
AAGTGCCTCG ACTGTGAACT CGAAGACATC CTTGAGGCCT CCCACGACGG CCAGTTCATC
AGTGACGGCG AAGGCAACAT TGTCATGGTG AATTCGGCAT GGGAGCGGAT CTGCGGTATC
CATCGCGACT TTGTCGTCGG CAAGAACGCC CGCGATATGG TCGCCCAGAA GTTCTACACC
GAGTCTTCCG TCATCGCTGC GATCGAGGCG AGAAAGAAAA TCACGATCAT GCTCGAGATG
ACCCGTGGAG AGAAGATCGG GCAGAAAATC ATGGCCACCG CGATCCCCAT CTGGGGGGAG
GACGGCGAGA TCAAGCGTGT TGTTGCAAAT ATCCGGGATA TTACGGAAAT TCTCTATCTT
AAGGATCTTT TGGAGAAGAC CAAGCAGCTC AACGAGATTT ATGCCGCCGA GCTCGAACAG
ATGCGTTTTC AACAATTGAC CCGGAACTGC GACGTCATCG CCAGGAGCCC GGAGACGAGG
CGGGTCCTGG AGATGGCCGC ACAGGTCGCC AAGGTGGACT CCACGGTCCT GATCATCGGG
GAATCCGGCG CCGGCAAGGA AGTGATCGCC AATGCCATTC ACCGGCTCAG CCAGCGCAAC
GAAGGCCCGC TCATCAAGAT CAACTGCGGC GCCATTCCCG AAAACCTGCT TGAATCTGAA
CTCTTCGGCT ACGACTCGGG TGCGTTTACA GGGGCTCGAA AACAAGGCAA ACCGGGCATG
TTCGAACTGG CGGAAAAGGG GACGCTCTTT CTCGATGAGG TGGGCGATAT TACACTGAAT
TTACAGGTGA AGCTGCTGCG TGCCCTTCAG GATCATTCGA TCATGCGCGT GGGAGGCCTC
AAACCCGTCC CGGTCGATGC CCGCATCGTG GCGGCGACCA ACCGCAACTT GCGCGAAATG
GTCTCTTCCG GAGCCTTCCG CGAAGATCTC TACTACCGGC TGAACGTGGT CTCCATCGAG
ATCCCGCCCC TGCGGGAGCG CAAGGAAGAC ATCCCGCTGC TCGTCCAGTA TTTCCTGGAA
AGGATCAACA AACGCTATCA GTTCAACAAG CGCTTCTCCC CGGCGGTGGT GGACCAGTTT
CTCTCCTATT CCTGGCCGGG TAACATCCGC GAGCTCGAAA ACGTCATCGA ACGCATGCTC
GTGATGACCG AAGACGAGGA GCTTCACGTC CGCCACTTGC CCGCCTATAT CCGCAACCAG
GCGCTGCCCC TGGAAGGTGG GATGGTCGTT CCGGCAAACC TGCCGCTCCA CAAAGCCATC
GAACAGGTCG AAAAGCAGTT GATCGAACAG GCGCTCAAGA AATACGGAAG CACGCGCAAG
GCCGCTGCCG CTCTGAAGCT CAACCAGTCG ACGGTGGTGC GCAAGATCAA GCGCTACAAC
ATTGCGGTCT GCCTGGAAGG GGACAAGATG CAAACCTGCT TCGAAGACCC CAGACTGAAA
ATCTGA
 
Protein sequence
MVSRLNPCFS AMAKTEGSAN KCLDCELEDI LEASHDGQFI SDGEGNIVMV NSAWERICGI 
HRDFVVGKNA RDMVAQKFYT ESSVIAAIEA RKKITIMLEM TRGEKIGQKI MATAIPIWGE
DGEIKRVVAN IRDITEILYL KDLLEKTKQL NEIYAAELEQ MRFQQLTRNC DVIARSPETR
RVLEMAAQVA KVDSTVLIIG ESGAGKEVIA NAIHRLSQRN EGPLIKINCG AIPENLLESE
LFGYDSGAFT GARKQGKPGM FELAEKGTLF LDEVGDITLN LQVKLLRALQ DHSIMRVGGL
KPVPVDARIV AATNRNLREM VSSGAFREDL YYRLNVVSIE IPPLRERKED IPLLVQYFLE
RINKRYQFNK RFSPAVVDQF LSYSWPGNIR ELENVIERML VMTEDEELHV RHLPAYIRNQ
ALPLEGGMVV PANLPLHKAI EQVEKQLIEQ ALKKYGSTRK AAAALKLNQS TVVRKIKRYN
IAVCLEGDKM QTCFEDPRLK I