| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_1085 |
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| Symbol | |
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| ID | 4460850 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 1340391 |
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| End bp | 1341851 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639701850 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_845214 |
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| Protein GI | 116748527 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.377293 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGTTCC GGCGTGGAAC GGCCCGCATT CCGGCGGCAC TATGGATTCC GATGGCGCTC
GCGATCATGA TCGTTACGGG GTGCGCGGCT GTGGGTCCCG ATTATGTGCG CCCCGAGGTG
CCGGTATACG AGGCCTGGAA TACCCGGCTC GATGGAGATG CGAACACCGG GGAAACGGAT
GTGCGGACCC TGGCGGCGTG GTGGACCACG CTCGACGATC CGAAACTGTC CGAATTGGTC
GGGCGCGCCG TGAAAGGCAA CCTCGATCTG AAGAAGGCCA AGGCACGGGT TCGCGAAGCG
CGCGCCCGTC GGGGCATTGC CGAAGCCGAC CTCTTTCCCT CGCTCGACGC CGCCGGCTCG
GCCACCTGGA ATCGGATCAT CAGCGACACG GGGACCGACA CGACCGGGGA CCTCTACACG
GCGGGCTTCG ATGCGGCATG GGAGCTGGAT GTTTTCGGGG GGGTCCGTCG GTCGGTGGAG
GCGGCGGACA GGGACCTTCA GGCATCCGAG GAGGATTTGC GCAACGTTCT CGTTTCCCTT
CTCGCAGAGG TGGGGCTTAA CTATCTCGAC GTCCGCATCT ATCAGGACCG GATCGCCGTG
GCGGAGGACA ACCTCGCGTC CCAGGACGAG ACCTGCCGGC TGACCGAGTG GCGGTATCAG
GCGGGTCTGA GCGATGAACT GGCGGTGCAG CAGGCGCGCT ACAACCGCGA AAACACGCGT
TCCCAGATAC CGCTCCTGAT CACCGGGCTG GAGGCGGCCC TGAACCGTGT TGCCGTGCTC
CTCGGAGAAC AGCCGGGCAG AGTTCATACG GAGCTTGAGC GTCGGGAACC CATACCTGTC
CCGCCTCTCC AGGTTGCGGT GGGTGTGCCC GCGGATCTCC TGCGACGCCG GCCCGACGTG
CGGCAGGCGG AGCGGCAGTT GGCCGCGCAG ACGGCCAGGG TCGGCGTGGC CACGGCGGAT
CTCTATCCCA AATTCACGCT GAACGGTTCC ATCGGCCTGG AAGCCCTTGC GCTTAAGGAT
CCGGCCTCCG CCAGTCTGCT GCTTTCGGGG GGGCCCGCGA TCACCTGGGC GATTTTCAAG
GGCGGAGCCA TCCGCCAGAA CATAGAGGCC CAATCGGCAC TTCAGGAACA GGCCCTGATC
CAGTACGAGG CCGTTATTCT CGGCGCGCTG GAGGAAGTGG AAAATGCGCT GGTCGCCTAT
GCGCAGGTGC AACTGCGCAG GCAGGCACTG AGCGAAGCCA CGCAGGCGGC CCGGAAGGCG
GCGGAGTTGG CGCGGCACAA GTACGAGGCG GGGCTGACGG ATTTCACGAA CGTGCTGGAC
GCGCAGCGTT CGCTCTTGTC GTTCCAGGAG CAGTTGGCCC TGAGCAACGG CAACGTGACC
GGCAACCTGA TGCGCCTGTA TAAGGCCCTG GGTGGCGGCT GGACGTCACC GGCGGGCAGC
GGGCGGGAAC ATGGAACGTG A
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| Protein sequence | MMFRRGTARI PAALWIPMAL AIMIVTGCAA VGPDYVRPEV PVYEAWNTRL DGDANTGETD
VRTLAAWWTT LDDPKLSELV GRAVKGNLDL KKAKARVREA RARRGIAEAD LFPSLDAAGS
ATWNRIISDT GTDTTGDLYT AGFDAAWELD VFGGVRRSVE AADRDLQASE EDLRNVLVSL
LAEVGLNYLD VRIYQDRIAV AEDNLASQDE TCRLTEWRYQ AGLSDELAVQ QARYNRENTR
SQIPLLITGL EAALNRVAVL LGEQPGRVHT ELERREPIPV PPLQVAVGVP ADLLRRRPDV
RQAERQLAAQ TARVGVATAD LYPKFTLNGS IGLEALALKD PASASLLLSG GPAITWAIFK
GGAIRQNIEA QSALQEQALI QYEAVILGAL EEVENALVAY AQVQLRRQAL SEATQAARKA
AELARHKYEA GLTDFTNVLD AQRSLLSFQE QLALSNGNVT GNLMRLYKAL GGGWTSPAGS
GREHGT
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