Gene Sfum_0876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0876 
Symbolrnc 
ID4460500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp1082176 
End bp1082904 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content60% 
IMG OID639701639 
Productribonuclease III 
Protein accessionYP_845008 
Protein GI116748321 
COG category[K] Transcription 
COG ID[COG0571] dsRNA-specific ribonuclease 
TIGRFAM ID[TIGR02191] ribonuclease III, bacterial 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCGT CCGACGGGCT TGAGGCGCTT CAGAACCTTC TCGGCTACCG TTTCGGCGAT 
GAAGGACTCC TTCACCGGGC CCTGGTGCAC CGGTCCTACC TGCACGAGAA TCCACACCTG
GACGAGAAGG ATAACGAAAC CCTCGAGTTT TTGGGGGATG CGGTGCTGGG GCTTGCGATC
AGCCACTTCC TGTTGGAACA GTTTCCGGAC TACAACGAAG GGGAGCTCTC CCGTCTCCGG
TCCGCCATCG TCAACGAACG GGAGTTGACC CGGATCGCCG TCGAGCTCAA TCTCGGAGAA
TACCTGTTGC TGGGAAAGGG CGAGGAGATG ACCGGCGGAC GCCGGAAAGC CTCCTTGCTG
GCCGACAGCC TGGAAGCTCT GCTCGCGTCC ATCTACCTCG ATGGCGGCCT GGACGCGGTT
CTCGGCGTGA TCAAGAAGCT CTTCGACGTG TATCTTCGGT TCGAAAAGCG GGAACATGTT
CTCAAGGCGC TGGACAAGGA CTACAAAACC CAACTGCAGG AACTGACCCA GGCCCGGTAC
AAGCTCACTC CGGTGTATGT TCTGGACCGT GAGGAGGGGC CGGACCACGA CAAGACCTTT
CACATGAACG TGGTCCTCGA AGGGCAGGTG TTGGCCGGCG GATCGGGCAA AAGCAAGAAA
GACGCCCAGC AGGCCGCCGC CGAGAAGGCA CTGCAAATCA TTGCCGCGGA TTCATGGTCC
CTTGACTGA
 
Protein sequence
MKPSDGLEAL QNLLGYRFGD EGLLHRALVH RSYLHENPHL DEKDNETLEF LGDAVLGLAI 
SHFLLEQFPD YNEGELSRLR SAIVNERELT RIAVELNLGE YLLLGKGEEM TGGRRKASLL
ADSLEALLAS IYLDGGLDAV LGVIKKLFDV YLRFEKREHV LKALDKDYKT QLQELTQARY
KLTPVYVLDR EEGPDHDKTF HMNVVLEGQV LAGGSGKSKK DAQQAAAEKA LQIIAADSWS
LD