Gene Sfum_0679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0679 
Symbol 
ID4460181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp823883 
End bp826549 
Gene Length2667 bp 
Protein Length888 aa 
Translation table11 
GC content60% 
IMG OID639701436 
Productpolynucleotide adenylyltransferase region 
Protein accessionYP_844813 
Protein GI116748126 
COG category[J] Translation, ribosomal structure and biogenesis
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0617] tRNA nucleotidyltransferase/poly(A) polymerase
[COG0618] Exopolyphosphatase-related proteins
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.197003 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0338911 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGTGA TCACCACTCA TATCAATGCC GATTTCGACG CGATGGCTTC CATGATCGCC 
GCCAAAAAGC TGTATCCGGA CGCGGTGCTG GTCTTTCCCG GTTCGCAGGA GAAGACGCTT
CGCGAGTATT TCATCAACTC CACGGTCTAC ATCTACGGCT TCAAGCGGCT CCGGGATCTG
GACCTGGACC GGGTCAGCAG GCTCATCCTG GTGGATACCC GGCAGATTTC GCGGATCGGC
AGGTTCGTGG AAATTCTCGA TCGTCCGGGG ATGGACATCC ACGTCTACGA TCACCATCCG
GACGCCGAGG ACGATATCCA AGGCGTCTTC AACCTGATCA AGCCGGTGGG GGCCACGGTC
ACGATCCTGA CGCAGCTCAT CCGGGAGCGC GGGTTGGAGG TGACTCCGGA GGAGGCAACC
ATCATGAGCC TCGGGCTCTT TGAGGACACC GGTTCCTTCA CCTTCAACAA CACGACCCCC
GAGGACTTCG AAGCCGCGGC ATTCCTGCTG CGCAGCGGAG CCGATCTGAA CGCCGTATCG
GACATGGTCA CCCAGGAACT GACGGCCGAG CAGGTCGGCC TCCTCAACGA GCTGATCACC
TCGGCCAAAA CCTACGGCAT CGCGGGCATC GACGTCTGCA TCGCCACGGT CTCCGTCGAG
AAGTACGTCG GGGATTTCGC CGTGCTGGTG CACAAGCTCA AGGACATTGA AAATCTGGAC
GTCGTCTTCG CCCTGGCCCG GATGGACGAC CGCGTCTACC TGGTGGGGCG CAGCCGCATT
CCCGAAATCA ACGTCAGCAC CGTGGCGGCC TACTTTGGAG GCGGCGGGCA CGCGACGGCG
GCTTCCGCGA GCATCAAGGA CCTCACGCTT TTCCAGGTGG AAAACAAGCT GCTCGAATTC
CTCAGAAGCT ACATTCATCC CTATCCGACG GCGGAGAGCA TGATGACCAG CCCGGTGATT
TTCACGGAGC CCGAGGTGAC CGTGGCCGAA GCCGGGCAGA GCATGATCCG CTACAACATC
AATTCGATGC CGGTCATGGA GGATGGGCGG ATCGTGGGCC TGACCACGCG CCAGGTCCTG
GAGAAGGCCA TATTTCACGG GCTGGAAAAG CGGGCGGTAC GGGAGTTCAT GACCACCGAC
TTCAGCACCG TCGGTCCCAA CGCCACGCTG CTCGAGATTG AAAGCTACCT GGTCGAACGC
CATCAAAGGA TCGTGCCGGT GATGGAGGAC AACCGGGTGA TCGGAGTCAT CACCCGCCGA
GACCTGCTGA AATTCCTGGT TGAAGACCAG ACCACCAACG CCCGGTCGCT CTACGGGGAT
ACGAACCTTG CCGCCTGGTC CAAACGCAAG AACGTGGTTG CGGTGATAAT GGAGCAATTG
CCCCGTGAAA TTGTCCAGAC ACTCAAGGAT TTCGGGAAGC TCGCGAAGGA CCTGGGGATG
AAGGCCTATG CGGTGGGGGG GTTCGTGCGG GACCTCCTGC TCCGGCGTTC CAACCTGGAC
ATAGACATCG TGGTTGAAGG GGACGGCATC GAATTCGCCA GGACATACGC CAGGGAACAC
GGCATCCGCT GCCGGTTCCA CAAGAAGTTC AATACCGCCG TGCTCATTTT TCCCGATGAC
CGCAGAGTGG ACGTGGCTTC GGCGCGTTTC GAGTATTATC AGTATCCGGC TGCCCTGCCG
ATTGTGGAAT TCAGCTCCCT GAAAATGGAC CTGTACCGGC GGGATTTCAC GATCAACACC
CTGGCGCTTG CGCTCAACCC CGGAGAATTC GGCCAACTGA TCGATTTCTT CGGCGGACAG
CGCGACCTGA AGGACAAGAC CATTCGGGTC CTTCACAACC TGAGCCTTGT GGAGGACCCG
ACACGGATTC TCAGGGCCAT CCGGTTCGAA CAGCGATTCG GATTCAGGAT CGGCAAGCAG
ACCGTGGCGC TCATCCGGAA TGCGGTCCGC ATGGGGTTGC TTCAGAAGCT GGGGGGCCGT
CGCCTCCTGC ATGAAATCCA GCTCATCATG GTGGAAGACG ATCCTTTGCC GCCTCTGCGC
CGCATGAACG AGTTCGCCGT GTGGCCGGTG CTGAGCGCCA ACATCCTGTT CGATCAGAAG
CTGGAGGATT TGTTCGTTCG GTTGCGCGAA GTGGTTTCCT GGCACCGGTT GAGCTTCCTG
GATGAGCCTC TCGAGCGCTG GTGGGTCTAC ATGCTGGGCC TGTTTTCAGG CCTGGCGGCG
GCCGACGTGG AGGACGCCTG CGGCAGGCTG CAGTTCACCG CCGGCCAGCG GGAACGCATT
GCCTGGGCTT ACCGGACGGT GAGCGGACTG CTCTGGGGGT TTTTCCCCGC GGCAGAGCAC
AAACCGAGCG CAATCTTCCG GGCGCTCCAG CCGTTCAAGC CCGAAGAACT GGTTTTTATG
ATGGCGAAGG CGCAGGACGA AACACCGCGG CGTGCCGTCA GCCACTATTT CCATCGCTAT
CGACACGTTT CCACCGAACT GAAGGGCAGG GATCTCAAGG AAATGGGTGT GCCGCCCGGG
CCTATCTACC GGGTGATTCT GGATGAACTG CTGGATGCGC GTTTGAACGG CGAAGTGAAA
GACCGCCAGG AAGAGCTTGC TTATCTGCGC GAGCGGCATG CGGAGCTCTT CGGCGGGGAA
GGGGAGGTCC CCGACCCGGC TTCGTGA
 
Protein sequence
MEVITTHINA DFDAMASMIA AKKLYPDAVL VFPGSQEKTL REYFINSTVY IYGFKRLRDL 
DLDRVSRLIL VDTRQISRIG RFVEILDRPG MDIHVYDHHP DAEDDIQGVF NLIKPVGATV
TILTQLIRER GLEVTPEEAT IMSLGLFEDT GSFTFNNTTP EDFEAAAFLL RSGADLNAVS
DMVTQELTAE QVGLLNELIT SAKTYGIAGI DVCIATVSVE KYVGDFAVLV HKLKDIENLD
VVFALARMDD RVYLVGRSRI PEINVSTVAA YFGGGGHATA ASASIKDLTL FQVENKLLEF
LRSYIHPYPT AESMMTSPVI FTEPEVTVAE AGQSMIRYNI NSMPVMEDGR IVGLTTRQVL
EKAIFHGLEK RAVREFMTTD FSTVGPNATL LEIESYLVER HQRIVPVMED NRVIGVITRR
DLLKFLVEDQ TTNARSLYGD TNLAAWSKRK NVVAVIMEQL PREIVQTLKD FGKLAKDLGM
KAYAVGGFVR DLLLRRSNLD IDIVVEGDGI EFARTYAREH GIRCRFHKKF NTAVLIFPDD
RRVDVASARF EYYQYPAALP IVEFSSLKMD LYRRDFTINT LALALNPGEF GQLIDFFGGQ
RDLKDKTIRV LHNLSLVEDP TRILRAIRFE QRFGFRIGKQ TVALIRNAVR MGLLQKLGGR
RLLHEIQLIM VEDDPLPPLR RMNEFAVWPV LSANILFDQK LEDLFVRLRE VVSWHRLSFL
DEPLERWWVY MLGLFSGLAA ADVEDACGRL QFTAGQRERI AWAYRTVSGL LWGFFPAAEH
KPSAIFRALQ PFKPEELVFM MAKAQDETPR RAVSHYFHRY RHVSTELKGR DLKEMGVPPG
PIYRVILDEL LDARLNGEVK DRQEELAYLR ERHAELFGGE GEVPDPAS