| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0570 |
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| Symbol | |
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| ID | 4461221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 694344 |
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| End bp | 695870 |
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| Gene Length | 1527 bp |
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| Protein Length | 508 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639701326 |
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| Product | NifA subfamily transcriptional regulator |
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| Protein accession | YP_844704 |
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| Protein GI | 116748017 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
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| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.106051 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.50757 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGAAA ACTACAACCT GGAAGAACTG CGGACACTCC ACGAAATCGC GAGAGTGGTA
TCGCGTTCCG CCGAATTGAA GGATCAGCTT CAGCAAACGC TGGACATTCT CAGCTCGCGG
CTGGGCATGG AAAGGGGTAT GGTCTCGGTG CTGGATCTCC AGACGGGGGA GGCATGGCTG
GACGTGGCCC GCGGGGTTGA CGTCGAGAGG GGCACCATCC GTTATCGGCC CGGGGAGGGG
ATCACCGGCA AGGTCGCCCA GAGCGGCCGT CCGATGGGGA TTGCCAACCT GGGTGATGAG
GCGCTCTTCC TGGACCGCAC CGGGGCGAGG CGTTCGCTCA ACCGCGAGGA ACTGGCCTTC
CTGTGCGTGC CGATTTTCTA TCAGGGCAGG AGCGTGGGGG TGCTCTCGGC CGACAAGCTG
GCTCGCCGGG TGGAGGACCT CGACAAGGAA GTCGAAATCC TGTCGGCCGT GGCGGAGCTC
CTGGGCAAGG TGGTCCATTT TCGCGCGGTG GAAGAGGAGA ATAGCCGTCT GCGGCGCATG
CTGGCCGAGG CCCGACGGCC CACGACGAAC ATCATCGGCC GGTCCAAGGT GATCCAGGAG
GTGTTGAGGG CCATCGACCA GGTGGCGGAC ACCAACACCA CGGTGCTCAT TTCGGGGGAA
ACCGGGACCG GCAAGGAATT GGTGGCCAGG GCCATCCACG ACAACAGTCG CAGAGCCAAG
GGGCCGCTGG TCCAGGTCAA CTGCGCCGCC ATGCCGGACA CTCTCCTGGA AAGCGAGCTG
TTCGGTCACG AGAAGGGGGC TTTCACCGGC GCCGTCACGC GCAGGCGCGG GCGCTTCGAA
GAAGCCCAGG GCGGAACGAT CTTCCTGGAC GAGGTGGGCG AGCTGTCTCC CATCGCACAG
GCGAAGCTGC TGCGCGTTCT CCAGGAACGC GAATTCCAGC CTCTCGGTTC CTCGCGGACG
GTCAAGGTGG ATGTCCGTGT CATTACGGCG TCCAACAAGG ATTTGGAAAA GGAAGTCGCG
CTGGGGACCT TCCGGTCCGA TCTCTACTAC CGGCTGAACG TGTTCCCGAT TTTCCTCCCG
CCGCTCAGGG AACGCGGACC GGATATTCTG CTGCTCGCCG ATTATTTCGT GCTCAAGTAC
GCGCGGGAAC TGGACAAGGA TGTGAAGCGA ATCACCACCA GCGCCATCGA CATGCTCATG
TGCTATCACT GGCCCGGGAA TGTCCGGGAG TTGGAGAACT GCATCGAACG GGCCGTGCTG
CTCGCCGGCG GGAATGCCGT CGATTCCTGG CATCTGCCGC CGACGCTTCA GATGAAGCCG
GTCGGAATGC AGAACGTCAG CCGGGGAAAG CTCGAGGCAC TGGTGAGCGC CTTCGAAAGG
GACCTCATCA CGGACGCCCT CAAAGACGTG CGCGGCAACC AGTCCCAGGC CGCCCGTCTC
CTGGGCACCA CCAAGCGGAT CGTTCAATAC AAGGTGGAAA AATACGGCAT CGATCCGAGG
CGCTTCCGGG TCAAGGCCCC GGCATAG
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| Protein sequence | MSENYNLEEL RTLHEIARVV SRSAELKDQL QQTLDILSSR LGMERGMVSV LDLQTGEAWL
DVARGVDVER GTIRYRPGEG ITGKVAQSGR PMGIANLGDE ALFLDRTGAR RSLNREELAF
LCVPIFYQGR SVGVLSADKL ARRVEDLDKE VEILSAVAEL LGKVVHFRAV EEENSRLRRM
LAEARRPTTN IIGRSKVIQE VLRAIDQVAD TNTTVLISGE TGTGKELVAR AIHDNSRRAK
GPLVQVNCAA MPDTLLESEL FGHEKGAFTG AVTRRRGRFE EAQGGTIFLD EVGELSPIAQ
AKLLRVLQER EFQPLGSSRT VKVDVRVITA SNKDLEKEVA LGTFRSDLYY RLNVFPIFLP
PLRERGPDIL LLADYFVLKY ARELDKDVKR ITTSAIDMLM CYHWPGNVRE LENCIERAVL
LAGGNAVDSW HLPPTLQMKP VGMQNVSRGK LEALVSAFER DLITDALKDV RGNQSQAARL
LGTTKRIVQY KVEKYGIDPR RFRVKAPA
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