Gene Sfum_0546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0546 
Symbol 
ID4461197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp663604 
End bp665037 
Gene Length1434 bp 
Protein Length477 aa 
Translation table11 
GC content59% 
IMG OID639701302 
Productcytoplasmic peptidoglycan synthetase domain-containing protein 
Protein accessionYP_844680 
Protein GI116747993 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0773] UDP-N-acetylmuramate-alanine ligase 
TIGRFAM ID[TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
[TIGR01082] UDP-N-acetylmuramate--alanine ligase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.18293 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.62301 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACGCA AGAATTCTAA GACCATCTAT CTGCTCGGCA TTGGCGGAAT CGCCATGGGC 
ACCCTGGCGA CAATGCTGAC GGAAAAAGGC TTCAACGTCA CGGGGTCCGA TCTGAACCTC
TATCCCCCCA TGAGCACTCA CCTGGAAACG CTCGGGATAC CGGTCTGCCA GGGATACGAC
GCCGCCAATC CGGAGAAGTG CGCGCCGGAT CTCGTCATCA TCGGCAACGC CATCCGGAGA
ACCAACCCGG AAGCCGAGTA CGTGCTGAGC CATGGTCTGC CGTACCTTTC GATGCCTCAG
GCCATAGCGG AATTCTTCCT GTGCGCCCAC AAGAGCATGG TCGTTGCCGG CACGCACGGG
AAGAGCACCA CTTCTTCCCT GCTGTCCTGG GTGCTGTCCC GGGGCGGGCT GGATCCGAGC
GTTTTTGTGG GAGCGTTCAT AAAGAACTGG AACAGCAGCT ACCGTATCGG CCGCGGCCCT
TTCATGGTCA TTGAAGGCGA CGAGTACGAC ACGGCGTTTT TCGACAAGGG ACCGAAATTC
CTGCATTACT CACCCTGGAT CGGCATTGTG ACCAGTGTCG AGTTCGATCA CGCGGACATC
TTCACGGATT TCGAGGCTGT CCGCCGCGCC TTTCGCTCTT TCGCGCGACT CATCCAACCC
GACGGCCACC TGATCCTCAA CGCCGACGAC GCGAACTGCC TGGCCCTGGC AAAAGAATCC
CGCGGCCGCG TAACCACCTA CGGGTGGTCC CGGACTGCCG ATTGGCGTAT TGTCGATATG
ATTCACACCG ACGGACGGAT TCGATTCACT TATGAGAATC CCCTGTCGCG GGGAACGGAG
TCGATACTGA CGCGCATGCC GGGCAGGCAC AATGTGAGCA ATTCCATGGC CGTGATGGCC
GCGGCCTCGC TTGCGGGTCT CGACAGGAAC GCGGTGCAGG ACGGGTTGCT GACTTTCGAA
GGCGTGAAAC GGCGCCAGGA CATCCTGGGT GAAATCGGCG GGATTCTGGT CATGGACGAC
TTCGCCCATC ACCCCACGGC AGTCCGGGAA ACCATTCAGG CATTGAAGGA CTTCTATCCC
CGAAGGCGCA TTTTCTGCGC CTTCGAACCG AGGACCAACT CGAGCCGGCG CAGCGTATTC
CAACAGGCCT ACACGACTGC TTTCGACGAT GCTTTCTGCA TCTGCATCAA GCATCCCCCC
GGCATGGACG CCATTCCACG AGAAGAACGG CTGGATGTCC AGAAACTGGT TGCCGATATC
GCCGAACGGG GAAAGGAGTG TCACGGCTTT GCATCGGCAG AAGATCTCAT CGGCTTTCTG
GTCGACCACT GCGCTTCGGG AGATCTTGTC GTGTGCATGA GCAACGGGAG TTTCGACGGA
CTGCCGCACG GACTTTGCAC CGCCCTGGCG CAAAAGCATG CAGGTGCATC ATGA
 
Protein sequence
MRRKNSKTIY LLGIGGIAMG TLATMLTEKG FNVTGSDLNL YPPMSTHLET LGIPVCQGYD 
AANPEKCAPD LVIIGNAIRR TNPEAEYVLS HGLPYLSMPQ AIAEFFLCAH KSMVVAGTHG
KSTTSSLLSW VLSRGGLDPS VFVGAFIKNW NSSYRIGRGP FMVIEGDEYD TAFFDKGPKF
LHYSPWIGIV TSVEFDHADI FTDFEAVRRA FRSFARLIQP DGHLILNADD ANCLALAKES
RGRVTTYGWS RTADWRIVDM IHTDGRIRFT YENPLSRGTE SILTRMPGRH NVSNSMAVMA
AASLAGLDRN AVQDGLLTFE GVKRRQDILG EIGGILVMDD FAHHPTAVRE TIQALKDFYP
RRRIFCAFEP RTNSSRRSVF QQAYTTAFDD AFCICIKHPP GMDAIPREER LDVQKLVADI
AERGKECHGF ASAEDLIGFL VDHCASGDLV VCMSNGSFDG LPHGLCTALA QKHAGAS