Gene Sfum_0447 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0447 
Symbol 
ID4461033 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp538393 
End bp539931 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content65% 
IMG OID639701203 
ProductFis family transcriptional regulator 
Protein accessionYP_844582 
Protein GI116747895 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.818927 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGACC TTCAGGGAAT GAAGCGGTTT CGGTGGACCC GGAGCCTGAT ACTGGGGCTG 
GTCGCCGTAG TCGGCGGATG CATGGTGGGC CCGAATTACA GGACGCCGCC CTCGGAGATG
CCCGGACAGT GGAGCGAGGA GCCCAAGGGG GTCGAAGTCG CCGCGGCGCC TGACATTTCG
CGATGGTGGA CCCTCTTTGA GGACCCGAAG CTGAACGACC TCATCGAACG GGCGGTCCGC
GCGAACAAGG ATCTGAAAAT CGCCGCGGCC CGGGTCCGGG AAGCCCGCGC CCAGCGGGGC
GTGACCGCGG CGGATCTTTT CCCCACGGTG AACGCGGACG GGAGTTATGT GTACAGCCAG
AAGAGCCTGA CCACCACGAA TCCGCCGCTC GTGTCCTCGG GAAGCAGCCC CGCGGCAACC
GTCGGCGGAG TCTCAACCGG CTCGACCAAC CTTTTCCAGG TCGGGTTCGA CGCCGGCTGG
GAACTGGACC TGTGGGGGGG CACGCGGCGC GCGGTGGAAG CCGCGGACGC CAATCTCGCC
GCCAGCGTGG AAAACCTCCG GGGCGTCCTG GTGACGCTGG TCTCCGACGT CGCGGTGAGC
TACATGCAGA TTCGCGGCTT TCAACTCCGC CTGGGGATCG CCCGGAACAA CATCGCCTCG
CAGCGGCAGA CCCTGGAGTT GACCGAGGCG CGGTTCGAGG CGGGTTTGAG CAGCGAACTG
GCCGTCGCGC AGCAGAAGGC GCAACTCGCG GCCACCGAAG CCACGGTTCC GGCCTTTGAG
AGCGGCATGC GGCAGGCCAT CCACCAACTC GGCGTGCTCC TTGGCGGCAA GCCGGAATTG
CTGCTCGAAG AGCTTCTCGA GGAGGAGCCG ATACCGCCCG TGCCGCCCGG CGTGCCTGCC
GGGTTGCCTT CCGACCTGCT GCGGCAGCGG CCCGACATCC GCGCATCCGA AAGGCAGCTT
GCGGCGGCAA CCGCAAGCAT CGGCGTGGCC ACGGCGCAGC TTTTTCCGCA ATTCAGCCTG
ACCGGCACGG TGGGACAGCA GAGCATGTTT TCATCGAAAT GGTTCACGCC CGGCAGCAAC
TACTTCAGCA TCGGTCCTTC GGTGAGTTGG GCGATTTTCG ATGCCGGCAG GATCCGGTGG
AATATCAAGG TGCAGGACGC CCGCCAGGAG CAGGCTTTCC ACACGTACGA AAAGACGATT
CTCGTGGCTC TGAAGGATGT GGAGGATGCC CTGATCGCGT ACTCCAAGGA ACAGGATACC
CGGGAGTCCC TCAAGCTTGC AGTGGATTCG AACCGGCGTG CATACGACAT TTCCTACGAA
CTGTACGCAA AGGGACTCGT GGACTTCCTC AACGTGCTCG ACGCCCAGCG CAACCTCTTT
GTCACGCAGG ATCAATACGC TCAAAGTACC CTTCGGGTGT CCGCCGATCT CGTGGCCCTG
TACAAGGCCC TCGGGGGCGG ATGGGATGTG CCGCCCGAAG CAGCCGCCCG TCCGGTGGCT
CGGAATGCTC CCGAGAACCC GGTCGGCCAG GGGCAATAA
 
Protein sequence
MIDLQGMKRF RWTRSLILGL VAVVGGCMVG PNYRTPPSEM PGQWSEEPKG VEVAAAPDIS 
RWWTLFEDPK LNDLIERAVR ANKDLKIAAA RVREARAQRG VTAADLFPTV NADGSYVYSQ
KSLTTTNPPL VSSGSSPAAT VGGVSTGSTN LFQVGFDAGW ELDLWGGTRR AVEAADANLA
ASVENLRGVL VTLVSDVAVS YMQIRGFQLR LGIARNNIAS QRQTLELTEA RFEAGLSSEL
AVAQQKAQLA ATEATVPAFE SGMRQAIHQL GVLLGGKPEL LLEELLEEEP IPPVPPGVPA
GLPSDLLRQR PDIRASERQL AAATASIGVA TAQLFPQFSL TGTVGQQSMF SSKWFTPGSN
YFSIGPSVSW AIFDAGRIRW NIKVQDARQE QAFHTYEKTI LVALKDVEDA LIAYSKEQDT
RESLKLAVDS NRRAYDISYE LYAKGLVDFL NVLDAQRNLF VTQDQYAQST LRVSADLVAL
YKALGGGWDV PPEAAARPVA RNAPENPVGQ GQ