| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0272 |
|---|
| Symbol | |
|---|
| ID | 4461061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 327262 |
|---|
| End bp | 327879 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639701027 |
|---|
| Product | Fis family transcriptional regulator |
|---|
| Protein accession | YP_844408 |
|---|
| Protein GI | 116747721 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.341377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.75535 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGGCAAC CGGATGGAGG TTGCTCGGGC AGGGGCGGGC AAAGAGCGAT GTCCATGGAT
GACCCTGATC TTGCACTGGT GAATGCCGCG GGCCGCGGCG ACGTGGACGC CTTCGAGTCG
CTGGTCGGGC GCTACCAGGG CCCGCTGCTC AATTTCATCG CCAGGATCCT TGGGGATCGC
GGCGCGGCCG AAGACCTCGC CCAGGAAGTT TTCTTGAGGG TCTATCGCGC GGCCCCCCGG
TTCGAGGCGA GAACGAAGGT CTCGACCTGG GTTTTTCGGA TAGCCTACAA CCTGGCCATG
ACCGAGCTCG ACCGCCGGAA GCGGCGGCGG ACCCTGGCGG AGGCCCTTCA CCGAAACGGG
GAGGAAGCTT CCCGGGAGGC TTTGGCCGAC CCGGGAGAAG ACCGCGAGTT CCAGGAGGAA
ATCGCATCGG CGCTCGACGG ACTCCCCGGC AATCAGAGGG CGGTGCTGCT CCTGCGCCTG
CACCAGGATT TGTCCTATCG GGAGATTGCT GAAATCCTGG GGACAAGCCT CGGGAGCGTC
GAGTCTCTGC TGTTCAGAGC CCGCAAGACC CTGAGAGAAA GCCTGAGGAG AAGAAAGCAA
CAGGGAGGGA CGAAGTGA
|
|---|
| Protein sequence | MRQPDGGCSG RGGQRAMSMD DPDLALVNAA GRGDVDAFES LVGRYQGPLL NFIARILGDR
GAAEDLAQEV FLRVYRAAPR FEARTKVSTW VFRIAYNLAM TELDRRKRRR TLAEALHRNG
EEASREALAD PGEDREFQEE IASALDGLPG NQRAVLLLRL HQDLSYREIA EILGTSLGSV
ESLLFRARKT LRESLRRRKQ QGGTK
|
|---|
| |