| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0197 |
|---|
| Symbol | |
|---|
| ID | 4461547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 232995 |
|---|
| End bp | 233810 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639700952 |
|---|
| Product | pyrroline-5-carboxylate reductase |
|---|
| Protein accession | YP_844334 |
|---|
| Protein GI | 116747647 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0345] Pyrroline-5-carboxylate reductase |
|---|
| TIGRFAM ID | [TIGR00112] pyrroline-5-carboxylate reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.625905 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGATC AAAAGAATTT CGGTTTCATC GGCGGTGGAA ACATGGGGGA AGCATTGATC
AAGGGCCTCC TCCGCGCTTC CCTCTGCGCT GCCGGACACA TCCACGTTTT CGATGTCAGC
CCCGCCCGTC TGCGGGACCT CGAAAGCACT TACGGGGTCC GATGCCGGAC CTCCGCGGCC
GAGGTGGCCG ATTCCGCCCA GGCGATCTTC CTCGCGGTAA AGCCGCAGCA CATGGAACCA
GCCCTCGACG GGATCGCCTC CCACCTCTCC CGCAGTCAGC TCATCATCTC CATCGCCGCC
GGCATCCCCA TCTCCATGAT AGCCGATGCG CTCCCGGAGG GGCAGCCGAT CATCCGGGTG
ATGCCGAACA CTCCCGCGCT GGTTTTGCAG GGGGCTTCCG CACTCGCCCG GGGCCGTCAC
GCCACGGACG AACACATGGA CCTTGCACTG GGCTTGTTTC GATCCGTCGG GACCGCGGTG
GAGGTGGAGG AAAAGCTGAT GGATGCCGTC ACGGGACTGA GCGGCAGCGG TCCAGGGTAT
GTGCTTCTGA TCATCGAGAG CCTGATCGAG GCCGCCGTGC TCCTTGGTCT TCCCCGAGCG
GTGGCCCGGG AGCTGGTCCT TCAGACGGTC TCCGGCACGG CGGGTTTGGT GAGGGAAACC
GGCAGGCACC CGGCAGAGCT CAAAGACCTC ATCACCTCAC CGGGCGGAAC GACCATTCGC
GGCCTGCACG TGCTTGAGGA GCGCGGCCTG CGGGGAGCGC TCATGAGCGC CGTCGAGGCC
GCCGCCCTGC GATCTTCGGA GTTGGGGAAA AAGTAA
|
|---|
| Protein sequence | MPDQKNFGFI GGGNMGEALI KGLLRASLCA AGHIHVFDVS PARLRDLEST YGVRCRTSAA
EVADSAQAIF LAVKPQHMEP ALDGIASHLS RSQLIISIAA GIPISMIADA LPEGQPIIRV
MPNTPALVLQ GASALARGRH ATDEHMDLAL GLFRSVGTAV EVEEKLMDAV TGLSGSGPGY
VLLIIESLIE AAVLLGLPRA VARELVLQTV SGTAGLVRET GRHPAELKDL ITSPGGTTIR
GLHVLEERGL RGALMSAVEA AALRSSELGK K
|
|---|
| |