| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0118 |
|---|
| Symbol | |
|---|
| ID | 4460428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | + |
|---|
| Start bp | 143223 |
|---|
| End bp | 144440 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 639700874 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_844256 |
|---|
| Protein GI | 116747569 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.423729 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATTT ATCTCTGGTC GGGGACCGAT CGTGCGGGGA AGAAGCAGAA AGGGGAAATC
GAGGCGGACA ACCTGGCTCT TGCCCGCCAG ATGATCTCGC GCAAGAACAT CACCATCAAG
AATATGCGGC TGAAACCCAA GGACATCAGC GAGTATATTC CGGCGCTGCA GGGCGGGGTC
AAGGAAAAGG AACTGGTCAT CTTCGTGCGC CAGTTTTCAA CCATGATCGA TGCGGGCCTG
CCCCTCGTGC AATGCCTGGA AATCCTCCAG GAGCAGCAGG AGAACTCCAC CTTCAAGAGG
ATCATCAAGA AGGTGAAGAA GGATGTGGAA GAAGGGGCGA CGCTCTCCGA TGCAATTCGC
AAGCACCCGA AAGTGTTTGA CAATCTTTTT GTGAACCTGG TCGCCGCCGG GGAAGTGGGC
GGCATCCTGG ACGTCATTCT GAACCGCCTG GCCGCCTATA TCGAAAAGGT GGCCAAGCTC
AAGAGGAGAG TCAAGGGCGC CATGACCTAT CCGGCGATCG TGGTCACCAT CGCCCTGCTC
GTCGTGGCGG TCATCCTCAT ATACGTCATT CCCGTGTTTG CGGGGCTCTT CAGAGAGGCG
GGGGCAAAGC TCCCGGCAAT GACCCTTGCG GTCATGAATT TGAGCGACTT CGCGCAGAAC
TACTTCCACT GGATCATACT GGGACTCGTT TTGGCCTATC TCGGTTTCAG ACAATTCAGG
AAAAACGATA AGGGGCGGGA ACTCACCGAT CGGCTGGCCT TGAGGATCCC GGTGTTCGGG
GGGCTCTTGA GGAAAGTCGC CGTCGCCCGT TTCACCCGGA CCCTGGGAAC CATGCTGGCC
AGTGGAGTGC CTATTCTCGA CGGCCTCGAC ATCGTCGCGG CCACTTCCGG CAATATGGTC
ATCGAAAAGG CGATCCGCGT GGCCCGGAAC GCGATTTCCG AAGGGCGGCC CATCGCGGAG
CCGCTCAGTG AAACCAAGGT CTTTCCGATG ATGGTGACCC AGATGATCGC GGTGGGCGAA
GCAACGGGCG CCCTGGACAC GATGCTCGGG AAGATCGCCG ACTTTTACGA CGATGAAGTC
GATACCGCCG TCGATGCGCT GACGTCTTTG CTCGAACCCA TGTTGATCGT CTTTCTCGGC
GTGACCATCG GCGGATTGCT GGTCGCCATG TATCTCCCCA TCTTCCAGAT CGCGGACGTG
GTGGGCAGAG GAGCGTAA
|
|---|
| Protein sequence | MPIYLWSGTD RAGKKQKGEI EADNLALARQ MISRKNITIK NMRLKPKDIS EYIPALQGGV
KEKELVIFVR QFSTMIDAGL PLVQCLEILQ EQQENSTFKR IIKKVKKDVE EGATLSDAIR
KHPKVFDNLF VNLVAAGEVG GILDVILNRL AAYIEKVAKL KRRVKGAMTY PAIVVTIALL
VVAVILIYVI PVFAGLFREA GAKLPAMTLA VMNLSDFAQN YFHWIILGLV LAYLGFRQFR
KNDKGRELTD RLALRIPVFG GLLRKVAVAR FTRTLGTMLA SGVPILDGLD IVAATSGNMV
IEKAIRVARN AISEGRPIAE PLSETKVFPM MVTQMIAVGE ATGALDTMLG KIADFYDDEV
DTAVDALTSL LEPMLIVFLG VTIGGLLVAM YLPIFQIADV VGRGA
|
|---|
| |