| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0117 |
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| Symbol | |
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| ID | 4460427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | + |
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| Start bp | 141441 |
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| End bp | 143156 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639700873 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_844255 |
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| Protein GI | 116747568 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E
[TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00247138 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTGGAA AGGTGAGATT TGTGGCCAAG AAAATCGGGG AACTGCTTCT TCAGGAAGGA
TTGATCAGCA AGGAACAGCT TGACCGGGCT CTGAACGAGC AACACCAAAC CGGGGAACGA
ATCGGAGGGG TCCTACTCAA ACTGGGATTC GTCAGTGAAG AAATGCTCAC GGAGTTCATT
GCCAAGCAGT ACAGCGCTCC TCAGGTGAAC ATCGCTAAAC TGACCGTCCC TAAAGATGTA
CTCGGTTTGA TTCCCCTCGA TATCGCCGCC AAGTACCAGG CCGTTCCCTT CGGTGTGATG
GGAACTACCG TGAACGTTGC CATGGCGGAT CCGGGCAATC TGTTCGTGAT CGATGACATG
CGCTTCCTGA CGAGGAAGAA CATCCAGGTT CACGTGGCTT CCGAACCGGC GATCAAGAAA
CTGCTCAGCC AGTTCTACGC GCCGGATGAC AATTTCGACG ACGTCCTTGG CATGCTCAAG
GAAGACGTCG ATGTCGACGT CATAGAAACC GCGGAGGAGA TGGATCTCTC TTTCCTGGAA
GACGCCGCGG AACAGGCGCC CGTGGTCAAA CTGGTGAATC TCATCATGAT GGATGCAATC
CGGAAACAGG CGTCGGACAT CCATCTCGAG CCATATGAAA AGCTGATGCG GGTACGGTTT
CGAATCGACG GCGTGCTCTA CGAAATCATG CGACCGCCGC TGCAACTGAA AAACGCGCTG
ATCTCGCGCA TCAAGATCAT GGCTCGTTTG GACATCGCAG AGCGGCGGCT GCCCCAGGAC
GGCCGCATCA AGCTCAAGGC CAAGGGGCGC GAGATGGATT TTCGCGTTTC CGTCCTGCCG
ACGCTGTTCG GCGAAAAGGT GGTTCTGCGT CTGCTGGATA AGTCCGGTCT GCAACTGGAC
ATGACCAAGC TGGGGTTTGA GGAGCTCCAG TACAAACATT TTCGAGAGGC CATCTACCAG
CCTTTTGGAA TGGTGCTGGT GACCGGCCCC ACAGGGAGCG GGAAGACCAC GACGCTCTAC
AGCGCCCTCT CGGAGCTCAA CAAGCTGAGC CACAACATCT CCACCGCGGA GGACCCCGTC
GAATACAACA TGGTCGGCAT CAACCAGGTG CAGATCCACG ATGCCATCGG GCTCAACTTC
GCGAACGCGC TGCGATCATT CCTGCGTCAG GACCCCGACA TCATCATGGT CGGTGAGGTG
CGGGATTTCG AAACGGCGGA AATCGCCGTG AAAGCGGCGC TCACGGGACA CCTGGTTTTG
AGCACCCTGC ACACCAATGA CGCTCCGAGC ACCATCAACC GGCTGCTCAA CATGGGCGTG
GAATCCTTCC TGGTTTCATC CGCCGTCAAC CTGGTCATCG CGCAGAGACT GGTGCGGCGG
GTGTGTCTGG AATGTCGGGA AGTGGAGGAT GTGACTCATG AAACCCTTCT CGACCTGGGG
TTGAGAGAGG ATGAGCTGGG GACTTTCGAA TGTTTCCGGG GGCGGGGGTG CGCGGTGTGC
AATGACACGG GATATCGAGG GCGAGTGGCA TTGTACGAAG TGATGCCCAT GCATGAACAG
ATCCGCGAAC TGGTGCTCAT GGGGGCTTCC GCCGCGGAGA TCAAGAAAGA GTCCATTCGC
CTGGGGATGA TCACTCTGAG GCGGAGCGGC ATCAACAAGC TTAAGGCTGG GATTACCTCC
GTGGAGGAAG TCATAAGGTC TTCCGCCAAG GACTAA
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| Protein sequence | MAGKVRFVAK KIGELLLQEG LISKEQLDRA LNEQHQTGER IGGVLLKLGF VSEEMLTEFI
AKQYSAPQVN IAKLTVPKDV LGLIPLDIAA KYQAVPFGVM GTTVNVAMAD PGNLFVIDDM
RFLTRKNIQV HVASEPAIKK LLSQFYAPDD NFDDVLGMLK EDVDVDVIET AEEMDLSFLE
DAAEQAPVVK LVNLIMMDAI RKQASDIHLE PYEKLMRVRF RIDGVLYEIM RPPLQLKNAL
ISRIKIMARL DIAERRLPQD GRIKLKAKGR EMDFRVSVLP TLFGEKVVLR LLDKSGLQLD
MTKLGFEELQ YKHFREAIYQ PFGMVLVTGP TGSGKTTTLY SALSELNKLS HNISTAEDPV
EYNMVGINQV QIHDAIGLNF ANALRSFLRQ DPDIIMVGEV RDFETAEIAV KAALTGHLVL
STLHTNDAPS TINRLLNMGV ESFLVSSAVN LVIAQRLVRR VCLECREVED VTHETLLDLG
LREDELGTFE CFRGRGCAVC NDTGYRGRVA LYEVMPMHEQ IRELVLMGAS AAEIKKESIR
LGMITLRRSG INKLKAGITS VEEVIRSSAK D
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