Gene Sfum_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0076 
Symbol 
ID4461166 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp93794 
End bp94720 
Gene Length927 bp 
Protein Length308 aa 
Translation table11 
GC content64% 
IMG OID639700828 
ProducttRNA synthetase, class II (D, K and N) 
Protein accessionYP_844214 
Protein GI116747527 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2269] Truncated, possibly inactive, lysyl-tRNA synthetase (class II) 
TIGRFAM ID[TIGR00462] lysyl-tRNA synthetase-like protein GenX 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000211286 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCGGAAC GGAATATCCT GTCCGCAAAG CGCGACGCGC TCGAGCTCCG CTCCCGGGTC 
ATCGAGCGCA TTCGCAGTCA CTTCCGGCGG GCGGGATTCC TGGAAGTCCA GACCCCGTTG
CTGACCCCGG CTCCCGCTCC CGAGCTCAAT ATCGAAGCCG TGCCCGCCGG TGACGGCTTT
TTTCTCGCAA CCAGCCCGGA GCTTTACATG AAGCGCCTCC TGGCGGCCGG ATACGGGAAA
CTCTTCCAGC TCACCCCCGT TTTCCGAAGC GGAGAAAGGG GCCGATTGCA CCACCCGGAG
TTCACTTTGC TGGAATGGTA CCGAACGGGA GCGAGCTACA AGGACATGCA ACGGGATTGC
GTGGAGCTGC TGCACGAGGT TTGTGCCTTC GGAGCGGCCA CGGGTGGGGG GACATGCCGC
GGCAGCGTGA TCGAACCCGG AAAACCATGG GAATCCCTGA CCGTTCGCGA CGCCTTCTTA
CGCCTTGCGG GATGGGACCC GGTCGTCGAC TTTGACCCCG ACCGCTTCGA TGTCGACCTG
GTGACGAAGG TGGAGCCCTA TCTCGGGTTC CCCAACCCCT GCTTTTTGGA AGACTATCCA
CCCGAACGGG CCGCACTGGC CCGTCTGAAG GACTCCGCCC CCCCCGTGGC AGAGCGCTTC
GAGCTGTATT GGGCAGGAAT CGAGCTTGCC AACGGCTTCA CGGAACTGAC CGATCCCGCG
GAGCAGCGGA AGCGCTTCGA GGCGGTACTC GCGGACCGAC ACGAGGCGGG GCTTTCATCA
AGACCGATGC CGGAAGCCTT TCTGGCCGCC ATAGAGCATC TTCCGCAATG CGCCGGAATA
GCCCTCGGCC TTGACCGGCT CGTGATGCTC CTGGCCGGAG CGGACAGCGT CGACCGGGTG
GTTGCGTTCC CTCCCGATCT TCTCTGA
 
Protein sequence
MPERNILSAK RDALELRSRV IERIRSHFRR AGFLEVQTPL LTPAPAPELN IEAVPAGDGF 
FLATSPELYM KRLLAAGYGK LFQLTPVFRS GERGRLHHPE FTLLEWYRTG ASYKDMQRDC
VELLHEVCAF GAATGGGTCR GSVIEPGKPW ESLTVRDAFL RLAGWDPVVD FDPDRFDVDL
VTKVEPYLGF PNPCFLEDYP PERAALARLK DSAPPVAERF ELYWAGIELA NGFTELTDPA
EQRKRFEAVL ADRHEAGLSS RPMPEAFLAA IEHLPQCAGI ALGLDRLVML LAGADSVDRV
VAFPPDLL