| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0057 |
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| Symbol | dapF |
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| ID | 4461147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Syntrophobacter fumaroxidans MPOB |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008554 |
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| Strand | - |
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| Start bp | 71613 |
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| End bp | 72476 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639700809 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_844195 |
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| Protein GI | 116747508 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.809521 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTTG AAAACGAACG GACCCGCTTT CTAAAGATGA CCGGGAGCGG GAATGACTTC
ATCGTGCTCG ACAACCGCGC TCAGGGGATC AGCCCTGAGC AGGGGCGGGA ACTGGCGCGC
CTGGCCTGTC GCAGGAAACT TTCGGTGGGC GCCGACGGGT TGATCCTCAT CGAAAACGAC
CCCGAGGTCG ATTTCAGATG GCGCTTTTTC AACGCGGATG GAAGCGAGGC GGAGATGTGC
GGCAACGGCG CGCGCTGCGC CGCCAGGTTC GCTCATATCA AGGGGATTGT CGCCAAATCC
CGCATGTCCT TCCGGACTCT GGCGGGAATC ATCGAGGCGG AGATCAAGGA ACCGCGAGTC
AAGATCCGAA TGACTCCGCC CCATGGTCTG GAACCGGACC TGAATGTCGA GGCCGAACAG
CGCTCGTTTC GTCTTCATTT CATCAATACC GGCGTGCCGC ACGTCGTATG CTTCCTCGAG
AACGACCGGG CGCTCGAGGA GATGAACGTA TTCCATTGGG GGCGTCTGCT GCGTCACCAC
CGGCGATTTC AACCCGCCGG CTCCAACGTC AATTTCGCCC TCGTGGAAGA CGCGAACCAC
ATGGCGATCC GCACCTACGA GCGAGGGGTC GAAGACGAGA CGCTGGCGTG CGGAACGGGC
TCCATCGCCT CCGCGCTGGT CGCCGCCGCC AAGGGCATGG TGCAATCGCC GGTGGAGGTT
CGGACGAGAA GTGGAGAAAC CCTGACCATC TATTTTGACA ACCCGTCCAC CGGGGCCGCG
GCGGAGTTCT CACAGGTATA CCTGGAAGGC GACGCGAAAG TGGTCTACGA GGCGGAACTT
TGGAAAGAAA CATTGAGGGA ATAG
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| Protein sequence | MPVENERTRF LKMTGSGNDF IVLDNRAQGI SPEQGRELAR LACRRKLSVG ADGLILIEND
PEVDFRWRFF NADGSEAEMC GNGARCAARF AHIKGIVAKS RMSFRTLAGI IEAEIKEPRV
KIRMTPPHGL EPDLNVEAEQ RSFRLHFINT GVPHVVCFLE NDRALEEMNV FHWGRLLRHH
RRFQPAGSNV NFALVEDANH MAIRTYERGV EDETLACGTG SIASALVAAA KGMVQSPVEV
RTRSGETLTI YFDNPSTGAA AEFSQVYLEG DAKVVYEAEL WKETLRE
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