| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfum_0056 |
|---|
| Symbol | |
|---|
| ID | 4461146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophobacter fumaroxidans MPOB |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008554 |
|---|
| Strand | - |
|---|
| Start bp | 70727 |
|---|
| End bp | 71602 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639700808 |
|---|
| Product | dihydrodipicolinate synthase |
|---|
| Protein accession | YP_844194 |
|---|
| Protein GI | 116747507 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.821032 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.798921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCAGG GCGCGATGGT GGCAATAGTG ACACCGTTCA AAGCCGGTCA GGTGGACGAA
GAGACGTTCC GCAACCTGAT TGAATTCCAG ATCGCCAATG GAACCCACGG CATTGTGCCT
TGCGGAACCA CCGGCGAATC GGCGACGCTC AGCTTCAATG AACACGAGCG CGTCATCGAA
ATCGCCGTGG AGCAGGTCGA CAAACGTGTT CCGGTTATCG CCGGGACTGG CTCCAACAAC
ACCGAGGAAG CCATCCGCCT GACGAAACAT GCCAAGAACG CCGGAGCCGA TGGGGCATTG
CTGATCAGTC CTTATTACAA CAAGCCGACG CAGGAAGGTT TGTATCGTCA TTACGAGAAA
ATCGCCAAAG CGGTCGATAT CCCTCTGGTG CCGTACAATA TTCCCGGTCG GACGGCCGTC
AATATGGAAC CGGATACGAT CGCGCGGCTC GCGAAAATCG ATAACATCGT GGCCATCAAG
GAAGCCGCGG GGAGCATGAA GCAGATCACG GACATCATTG CGCGGTGCGG AGACGAGCTG
GTTGTGCTGT CCGGAGAGGA CTTCCTCACC TTTCCCCTGC TGTGCGTGGG CGGCAAGGGC
GTCATATCCG TGGTCTCCAA CATCGCCCCG GCGGACATGG CCAATCTGTG CAACCTGTTC
CTCGGCGGCG ATTTCGACGC CGCGCGGAAG CTGTACTACC GGCTGCTGCC GCTCTGCCAC
GGGCTCTTCT ACGAGACGAA CCCGGCTCCG GTCAAAGCCG CGCTGGCCAT GATGAACAAG
ATCCCGAGCG ATGAGTTGCG CCTGCCTCTG GCCCCCATGT CACCGGCCAA CAGGCTGCGT
CTCCGCCAGG ATCTCCAGGC TTACGGACTG ATCTAG
|
|---|
| Protein sequence | MFQGAMVAIV TPFKAGQVDE ETFRNLIEFQ IANGTHGIVP CGTTGESATL SFNEHERVIE
IAVEQVDKRV PVIAGTGSNN TEEAIRLTKH AKNAGADGAL LISPYYNKPT QEGLYRHYEK
IAKAVDIPLV PYNIPGRTAV NMEPDTIARL AKIDNIVAIK EAAGSMKQIT DIIARCGDEL
VVLSGEDFLT FPLLCVGGKG VISVVSNIAP ADMANLCNLF LGGDFDAARK LYYRLLPLCH
GLFYETNPAP VKAALAMMNK IPSDELRLPL APMSPANRLR LRQDLQAYGL I
|
|---|
| |