Gene Sfum_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0004 
Symbol 
ID4460153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3935 
End bp4657 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content57% 
IMG OID639700757 
Producthypothetical protein 
Protein accessionYP_844143 
Protein GI116747456 
COG category[S] Function unknown 
COG ID[COG5345] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.766809 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.6832 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTTTCG TGGACACCAT GATCAACCTG ATGGAAAACG AGCTCCACGG GCGTGTTCTT 
GGCTGGCGTC CCAACGATAT CATCGTCGGC CGCTTCACGG ACAACATCAA CAACTACCAG
TTGGGGGTCC TGGAGGCGAT CCGGTTCACC ACCCTGCGTC TGAAAGACAG CCTGACGCGC
ATGGGCGACG CCGATACCTA CGATCCCGAC CTCGAATATG CGTTGAACCT GTTCATGATC
CGGGCGACCT CCTTCTGGTT TCCGACCGCG GAAGGGGAAT ACGACAAGGC CATCGAACAT
CTCCGGAACT TCCGGGCCAA GCTGGAAAAG GGCCAGCGCA CCTTTTACTA TCGCAAGGAC
AACCTCATTT CGCTGCTGTC CGTGTACAAG GACCTCCTGG GCAACGTGAA CAAGACTCTG
GTCGTTTCTC CCATCAGCTG GTTCCAGGCC GATGATTCGT TTTACTACGC CAAGGGCGTG
GCCCACGTGT GCTACGAGAT CCTCCGGGTC GTACGGGTCG GTTACCAGAA ACAGCTGGCT
TCGACCATGT ACGGCATCGA GATGATGGAC ACGATCGTGC ATGAGCTCTA CCGGGTTGAG
AATATAGATC CGTGGCTCAT TCTTGACAGC GACCTCGGCA GTCTCCTCGC CAACCATCGC
GCCAACATCA ACGCGCCGCT CAGCGAGGCG ACCCACCTGA TGGGTATCCT CGCTCTGCTG
TAG
 
Protein sequence
MTFVDTMINL MENELHGRVL GWRPNDIIVG RFTDNINNYQ LGVLEAIRFT TLRLKDSLTR 
MGDADTYDPD LEYALNLFMI RATSFWFPTA EGEYDKAIEH LRNFRAKLEK GQRTFYYRKD
NLISLLSVYK DLLGNVNKTL VVSPISWFQA DDSFYYAKGV AHVCYEILRV VRVGYQKQLA
STMYGIEMMD TIVHELYRVE NIDPWLILDS DLGSLLANHR ANINAPLSEA THLMGILALL