Gene Sfum_0003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0003 
Symbol 
ID4460152 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp3108 
End bp3491 
Gene Length384 bp 
Protein Length127 aa 
Translation table11 
GC content51% 
IMG OID639700756 
Productputative 6-pyruvoyl tetrahydropterin synthase 
Protein accessionYP_844142 
Protein GI116747455 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0720] 6-pyruvoyl-tetrahydropterin synthase 
TIGRFAM ID[TIGR00039] 6-pyruvoyl tetrahydropterin synthase/QueD family protein
[TIGR03367] queuosine biosynthesis protein QueD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.702249 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.634668 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAAAACA CCTTTTATGA AATAAAGATC ATCACCGATT TTTCCGCCGC GCACCACCTC 
AGGGACTTTC GCGGTAAGTG CGAGAACCTG CACGGCCACA ACTGGAAGAT CGAAATCGTC
CTGCGGGGGA CCGAACTGAA TGAGATAGGG GTCCTGGTCG ATTTCGGCGA AGTCAAGCAA
GCGACTCGGG CACTTCTTTC CGAGGTGGAC CACCATTATC TGAACGAAAT CCCGTTTTTT
GCGGATCGAA ACCCGTCATC CGAGAATATC GCCCGGTATT TGTTTGAGCG TCTGGCTGAA
AAGTTCGATA ATGACAAGCT CCGGTTATAT AGGGTATCGG CTTGGGAATC CGACGATGCC
TGTGCGACAT TCATGCGTGA GTGA
 
Protein sequence
MKNTFYEIKI ITDFSAAHHL RDFRGKCENL HGHNWKIEIV LRGTELNEIG VLVDFGEVKQ 
ATRALLSEVD HHYLNEIPFF ADRNPSSENI ARYLFERLAE KFDNDKLRLY RVSAWESDDA
CATFMRE