Gene Sfum_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfum_0002 
Symbol 
ID4460150 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophobacter fumaroxidans MPOB 
KingdomBacteria 
Replicon accessionNC_008554 
Strand
Start bp2035 
End bp2322 
Gene Length288 bp 
Protein Length95 aa 
Translation table11 
GC content51% 
IMG OID639700754 
Producthistone family protein DNA-binding protein 
Protein accessionYP_844141 
Protein GI116747454 
COG category[L] Replication, recombination and repair 
COG ID[COG0776] Bacterial nucleoid DNA-binding protein 
TIGRFAM ID[TIGR00987] integration host factor, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.634668 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTTGA CCAAGGCACA CATCGTAGAG AATCTGTTCG CAAAAAATAT TTTCACCAAA 
ACCGAGTCGG CTCAGATCAT TGAAACGCTC TTCGAGATCG TCAAACAGAC CTTGGAGCAC
GGCGAGGACG TCCTGATCAG CGGCTTCGGG AAATTCAGCG TCAAGGAAAA GAATCAGCGC
AGGGGGCGCA ATCCTCAGAC CGGCGATCCG ATCATGCTTT CTCCCCGAAA GGTGGTCACT
TTCAAGTGCT CGGGTGTCTT GCGGGAAAGA ATCAACCTGG CGAAATAG
 
Protein sequence
MTLTKAHIVE NLFAKNIFTK TESAQIIETL FEIVKQTLEH GEDVLISGFG KFSVKEKNQR 
RGRNPQTGDP IMLSPRKVVT FKCSGVLRER INLAK