Gene Mthe_1534 details

Gene Information

• Locus tag: Mthe_1534
• ID: 4461721
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Methanosaeta thermophila PT
• Kingdom: Archaea
• Replicon accession: NC_008553
• Strand: +
• Start bp: 1661695
• End bp: 1663620
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 639700557
• Product: hypothetical protein
• Protein accession: YP_843946
• Protein GI: 116754828
• COG category: [K] Transcription
• COG ID: [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.101346
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAAAG CAATGAGCAA TGTGGATGTG GCTGCGATCG TGGCTGAGCT TCAAACCCGG 
ATAGCCGGGG GATTTTTCGG CAAGGCCTAC CAGAGCTCGG GAGATGCCAT ATGGCTCACA 
ATCCAGGCAC GCGAGGGGAG GCTGGATATC ATCCTGGAGG CGGGAAGAAG GGCGCACGTC 
ACCAGGAAAG AGAGAGTGGT GGGCAGGACT CCTCCGCAGT TCCCTGCGAT GCTCCGCTCA 
CGGCTCTCTG GCGGGAGGAT CGTGAGCGTT GAGCAACACG ACTTCGACAG GGTCATGGAG 
ATCTGCGTTG AGAGATCTGA TGGAAGGTAT CGGCTGGTGG TTGAGCTCTT CCCGAAGGGG 
AACATGCTGC TTCTCGATGA TGAAATGAGG ATCATACTCC CGCTCAGGCC GATGAGCTTC 
AGGGACAGGA AGCTCATCGC TGGCGAGCAG TACGTATACC ATGCTGGAGC AGAGGATCCG 
AGAAGCGTAT CGATTGAGCG GCTGGAGGCG ATCCTCCACA GCTCAGACGC AGATCTCGTG 
AGAACACTTG TTCGCAACCT CAATATGGGC GGGACGTATG GGGAGGAGGT CTGCCTCAGG 
GCCGGGGTGG ATAAGAACAC CCCTGCAACC GCTCTATCAG AGGAGGAGAT CGCGAGGGTG 
CATTCTGCTC TGAGAGATGT CTTCGATATC AGAGAGATCA GGCCTCAGAT AGTTTACAGG 
GACGGGGAGC CGTTTGATGT GATCCCCTTC CCGCTGGAGG TCTACAAGGG GCTCGAGGCG 
AGATCCTTCG AGAGGTTCAG CGATGCACTT GATGAGTTCT TCGTGGCAGA GCCGGAGATG 
CCCAAACTCA GCGCTCTTGA GAGAAGGCTG GAGCTCCAGA GGGCTGCGAT CGATGAGCTC 
AGGGCCAAGG AGACTCAGCT GGCCTCGATG GGCGATTTCA TTTACCAGAG GTATTCTGAG 
ATCGACTCGA TACTGAAGGC GATAGCAGGT GCGAGGGAGA GAGGGTTATC ATACACAGAC 
ATCTGGGAGA GGATACAGAG CTCGGGAAAG TCTGCTGTAA AATCCCTGGA TTACAGCGGC 
GAGATGATAG TAGAGATTGA TGGGGTCACT CTGGAGCTGA ATGCAGGTCT CACAGTGCCT 
CAGAACGCAG GGAGGTACTA TGAGCGTGCT AAAGAGGCGG CGAAGAAGGC CGCAGGAGCA 
GAGGAGGCTC TGAGGAGGAC AGAAGATCTC CTTCAGCGTG GAGAGGAGCG AAGAAGGTCT 
CCAGTTTTGA AACGAAGACA TAAACCGAGG TGGTTCGAGA GGTTCAGGTG GTTCTACTCC 
TCAGATGATT TCCTTGTCAT AGGCGGGAGG GATGCGGATG GGAACGAGGA GATATACCTC 
AAGTACCTGG AGAAGAGGGA TCTCGCGCTC CACACAGACT ACCCCGGAGC GCCGCTGACG 
GTGATAAAGA CGGAGGGGCG GGAGGTGCCG GAGAGGACTG TGGAGGAGGC AGCGCAGTTC 
GCCGTCAGCT ACAGCAACCT CTGGAGGGAG GGCGTGGCCT CGGGCGACTG TTATGTGGTC 
AGAGGTGATC AGGTCACCAA GACCCCAGAG CACGGCGAGT TTCTGAGAAA GGGAGCGTTC 
GTCGTCCGAG GGGAGCGCAG GTATCTCAGA GATGTCCCTC TGGGGGTTGC ACTTGCGATC 
GCCGATGGAT CCTTGATAGG TGGGCCGGTC TCAGCAGTGA GATCTAAAAG TTCGGAGGCG 
ATCGAGCTCG AGCCGGGCGA GTACATGCCA GACGATCTCG CGAAGATGAT ATACAGGCAG 
CTCCTCGAGA TCTGCGAGGA CAGGAGGTAC CTGAAGGCGA TCGCGTCTCC TGATAAGATC 
GTGGCATTCC TGCCTCCCGG CGGATCCAGG ATCAGGCGGT TTGATGTGAG GAAGATCGGC 
GTCTAG 

 

Protein sequence

MKKAMSNVDV AAIVAELQTR IAGGFFGKAY QSSGDAIWLT IQAREGRLDI ILEAGRRAHV 
TRKERVVGRT PPQFPAMLRS RLSGGRIVSV EQHDFDRVME ICVERSDGRY RLVVELFPKG 
NMLLLDDEMR IILPLRPMSF RDRKLIAGEQ YVYHAGAEDP RSVSIERLEA ILHSSDADLV 
RTLVRNLNMG GTYGEEVCLR AGVDKNTPAT ALSEEEIARV HSALRDVFDI REIRPQIVYR 
DGEPFDVIPF PLEVYKGLEA RSFERFSDAL DEFFVAEPEM PKLSALERRL ELQRAAIDEL 
RAKETQLASM GDFIYQRYSE IDSILKAIAG ARERGLSYTD IWERIQSSGK SAVKSLDYSG 
EMIVEIDGVT LELNAGLTVP QNAGRYYERA KEAAKKAAGA EEALRRTEDL LQRGEERRRS 
PVLKRRHKPR WFERFRWFYS SDDFLVIGGR DADGNEEIYL KYLEKRDLAL HTDYPGAPLT 
VIKTEGREVP ERTVEEAAQF AVSYSNLWRE GVASGDCYVV RGDQVTKTPE HGEFLRKGAF 
VVRGERRYLR DVPLGVALAI ADGSLIGGPV SAVRSKSSEA IELEPGEYMP DDLAKMIYRQ 
LLEICEDRRY LKAIASPDKI VAFLPPGGSR IRRFDVRKIG V