| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mthe_0745 |
|---|
| Symbol | |
|---|
| ID | 4462124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosaeta thermophila PT |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008553 |
|---|
| Strand | - |
|---|
| Start bp | 785504 |
|---|
| End bp | 786826 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639699755 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_843175 |
|---|
| Protein GI | 116754057 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.300133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGGT TTACCTACAC CTCGATACAT GCATGGAGCA TGTTCGGTGG CAAGGATCAC
ATACAGGTCG TCAACGGTCA CCTCCACATT TCAGGTGCCG ACACAGTCGA GATAGCGAGG
CGGTTTGGCA CCCCTGTTTA CGTCACATCA GAGGATCGGT TGAGGGAGAA CATTCGGAGG
TATCACAGAG CTTTTCCAGA TGCTGATAAG TACTTCGCCG TGAAGGCGAA TGGCAACATC
TCGATAATAA GAATTCTCGC GCAGGAGGGT GCAGGGGCTG ATGTCTTCTC CGCGGGAGAG
CTTTACCTGG CCAGGCTTGC GGGTGTTCCC AGGGAGAGGA TACTCTTCAA TGGTAACTCC
AAGAGGGATG AGGAGCTGAG GATGGCTGTG ACCTCAGGAG TTCGGGTCTC CATCGATTCT
GAGGAAGAGC TGGAGAGCCT GAGCAGGATT GCATCCGAGG AGAGTAAGAA TGTGGAGATC
CTCTTCAGGG TCAACCCTGA CATCTCGGTG AATACACATC CCAAGATAGC AACTGGCCTG
AAGAGCTCGA AGTTCGGCAT ACCCGCGCAG TCTGTGAGGA GCATCTGCGA AAAGGCGATG
CATATGGATG GCATTAAACC GATCGGTCTC CACTGCCACA TAGGATCCCA GATACTCGAT
GTCTCGTCGT TTTCAGAGGC CGCCGCCAGG ATGATGGATC TGGTAGGGGA GATAGTCGAT
ATCGGGGGTG ATATGGAACT CCTGGATCTC GGTGGTGGCC TTGGGATACA GTACGATCCT
GCAGCGCCTC CAGCGCCGTC TCCAGAGGAT CTCGCGAATG CAGTGCTGCC TGTGATTGAG
AGGAGATCTG AAGAGCTTGG CGTCAGGCTG AAACTGATTC TGGAGCCGGG AAGGAGCATC
GTCGCGGATA CCACCATTTT GCTCACAGGG GTGAATGTTG TCAAAAGGGC CCACGTCACG
TTTGTGGGTG TTGATGCCGG ATTCAATGTG CTTGCACGGC CGATGCTCTA CGATGCCTAC
CATTACATCG TTGTGGCGAA CAGGGCAGAT GCTGAGATCT CTGAGAGATA CACGGTCGTG
GGGCCGATAT GCGAGAGCGG AGATGTCCTC GCGCGCAATA GGGCGCTTCC TGTGGTGAAG
AAGGGTGATA TTCTAGCATT TCTCGATGCA GGAGCATATG GATTTTCGAT GTCATCTCAG
TACAACGGCC AGCCTAGGCC CGCGGAGGTT CTGGTTCGCG ATGGAGAGGT GGAGCTCATA
AGAAAGGCGG AGGATATCAG CGCACTTCTG GCATGCCAGA TCATACCACC GAGGCTGATG
TGA
|
|---|
| Protein sequence | MIRFTYTSIH AWSMFGGKDH IQVVNGHLHI SGADTVEIAR RFGTPVYVTS EDRLRENIRR
YHRAFPDADK YFAVKANGNI SIIRILAQEG AGADVFSAGE LYLARLAGVP RERILFNGNS
KRDEELRMAV TSGVRVSIDS EEELESLSRI ASEESKNVEI LFRVNPDISV NTHPKIATGL
KSSKFGIPAQ SVRSICEKAM HMDGIKPIGL HCHIGSQILD VSSFSEAAAR MMDLVGEIVD
IGGDMELLDL GGGLGIQYDP AAPPAPSPED LANAVLPVIE RRSEELGVRL KLILEPGRSI
VADTTILLTG VNVVKRAHVT FVGVDAGFNV LARPMLYDAY HYIVVANRAD AEISERYTVV
GPICESGDVL ARNRALPVVK KGDILAFLDA GAYGFSMSSQ YNGQPRPAEV LVRDGEVELI
RKAEDISALL ACQIIPPRLM
|
|---|
| |