| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6865 |
|---|
| Symbol | |
|---|
| ID | 4454823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008545 |
|---|
| Strand | + |
|---|
| Start bp | 77858 |
|---|
| End bp | 80761 |
|---|
| Gene Length | 2904 bp |
|---|
| Protein Length | 967 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639698927 |
|---|
| Product | YadA domain-containing protein |
|---|
| Protein accession | YP_840487 |
|---|
| Protein GI | 116687241 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.557127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGTACG ACAACGCTGG CCACACGTCG GTGACGCTCG GCGGCACGGC AGCTGCAGCG
CCGGTCGCGC TGACGAACGT GGCGGCCGGC ACGCTGTCCG CGTCGAGCAC GGACGCCGTC
AACGGTGCGC AACTGAACAC GACCAACCAG GCCGTTGCGA ACACTTCGAC GTCGGTGACG
AATTTGTCGG CAAGCATCAA TGCGGGCACG GTCGGTCTGG TGCAACAGGC CGGCGGTGCG
CCGGGCCGCG GCACGATTAC GGTCGGTGTG CAGACCGGCG GCACAACGGT CGATTTCGCC
GGCACGAACG GCGCACGTAC GCTGTCCGGC GTCGCGGCCG GCATCGCAGC GACCGACGTC
GTGAACGTCG GGCAGCTCGA TGCCGTCGCC GGCACCGCGT CGAACTCGGT CCAGTACGAC
AAGGCGGACC ATACCGTCGT CACACTCGGC GGCACCGTGG CAGGAGCGCC CGTCGCGCTG
AGGAACGTGG CGGCCGGCAC GCTGTCGGCC GCGAGCGCGG ACGCGGTCAA CGGCGCTCAA
CTGTTCGCGA CGAACCAGGC CGTCGCGAGC ACGTCGACGT CGGTGACGAA TCTGTCGGCC
AGCATCGATG CGGGCACGGT CGGCCTGGTG CGGCAGGCCG GCGGTGCGCC GGGAAGTGGC
CCGATCACGG TTGGCGCGCA AACCGGCGGC CCGTCCGTTG ACTTCGCCGG GACGACCGGT
CCGCGCACGC TGGCCGGCGT CGCGGCTGGC ACCGCTGCGA CCGATGCGGT CAACGTTGGT
CAGCTGAGCA CGGTGGCCGG TACCGCGTCG AACTCGGTCC AGTACGACAA CGCGGGCCAT
ACGTCGATCA CGCTCGGCGG TACCGCGGCG GCAGCGCCGG TCGCGCTCAC AAACGTGGCG
GCCGGCACGC TGTCGGCCGC GAGCACGGAC GCGGTCAACG GGGCACAGCT GAACACGACC
AATCAGGCCG TCGCGAGCAC GTCGAGATCT CTGATGAATC TGTCGGCAAG CATCGACGCC
GGCACGGTCG GTGTGGTGCA GCAAGTCGGC GGCGCCCCGG GCAGAGGCGC GATCACGGTC
GGCGCGCAGA CCGGCGGCAC GTCTGTCGAT TTCTCCGGGG CGAGCGGCGC ACGCACGCTC
TCGGGCGTCG CGGCCGGCAC CGCCGCAACG GATGCCGTCA ATGTCGGCCA GCTCGGCGCA
GTTGCCGGCG TCGCGGCGAA CGCGGTGCAG TACGACAACG CGGGCCATAC GTCGGTCACG
CTCGGCGGTG CGGCAGCTGC AGCGTCGGTG GCGCTCACGA ACGTGGCGGC CGGCACGCTG
TCGGCATCGA GCGTCGATGC CGTCAACGGT GGCCAGCTGT TCGCAACGAA TCAGGCGGTC
GCCAACACGT CGACGGTCGT CACGAACCTG TCGAACGGCA TTGCGGCAGG CACGGTCGGT
CTGGTGCAAC AGGCCGGCGG TGCACCCGGC ACCGGGCAGA TCACGGTCGG CGGGCAAACC
GGCGGCACGT CGGTCGACTT CTCCGGCACG GACGGGACGC GCAAGCTGTC TGGCGTCGCC
GCCGGCACGG CCGCAACCGA TGCCGTCAAC GTCAGCCAGC TCAATGCTGT TGCTGGCGTC
GCAACCAACG CGGTGCAGTA CGACAACGCG GGCCGCACGT CGGTCACGCT CGGCGGCGCA
GGTGCTGCAG CGCCGGTTGC TTTGACGAAC GTGGCCGCCG GAGCGCTATC GGCCTCGAGT
ACGGACGCCG TCAACGGCGC ACAACTGTAT GCGACGAATC AAGCGTTGTC CGGCACAACG
TCGACCGTCA ACGCCCTGTC GACAGGAATC GCGGCCGGTA CGATCGGTCT CGTGCAGCAG
GCAGGCGGTG CACCCGGCAC TGGGATGATC ACAATCGCCG CGAAAACAGG CGGCACCGCT
ATCGACGTCT CCGGCACCAG CGGTGCGCGG CAACTGAAGG GGGTTGCCGC CGGGACTGAC
GCGACCGATG CAGTCAACGT CAGCCAGCTC AATGCCACCA TCAGTAGCGC GACCGCGAAT
GCTGTCGTCT ACGACAGCGC GGCGCGATCG ATCGTGACCC TCGGCGGACT CGGCGCATCG
TTGCCGGTGA CGTTGCGCAA TGTGGCGGCT GGCGTTTTGT CCGGCAATAG CACCGACGCC
GTCAACGGCT CCCAGCTCTA CATGACGAAC CAGGCTGTCG CAGCTAACAC GGGTGCGATT
GACGCTCTCA CGAACAGCCT GACCGACGTC CAGCGCTCCA TGGCCAGGAA CGCAGCGCAA
CTGCAGCCGA TCGTCAGTGC CGATGCGTTG AAGTACTTCG CGGCATCGTC GACCGGTGCA
CCTGCGAGCG CGAGCGGCAC AGAGACAGTT GCAGCTGGAG GCAATGCACT TGCCGCCGGT
GCCCACAGTG TCGCAATCGG TACCGGCGCA CAGGCAATCG GCAGTGGCGC TCTCGCGCTC
GGTGCGAATA CATCGGCCAA GGGAAGCAAC TCAATCGCCC TCGGTCAGGG TTCCGCCGCG
TCGGCCGACA ACACCGTATC AATTGGCAAC AGTGCGACGG GGCTCACGCG CACGCTGACG
AACGTCTCTG TCGGTGTCGC ACCGACCGAC GCCGTCAATG TCCGGCAGCT CAGCGACGCG
GTCGGAGGGC TGCGCTCGCA GATCGAGCAC GACCGGGCCG ATGCGAACGG TGGCTCGGCC
AGTGCCGTTG CGATCGCATC GCTGCCGCAG GCGCCCGCGC CTGGTCACAG CGTCGTGTCG
ATCGGCGGGG GCACGTATGC GGGTCAATCC GCAGTGGCGG TCGGCATGTC CACCTACGCC
GGCCGCTGGA TCCTGAAGGC ATCCGGTTCC ACCAACACAC GCGGCACGGT CGCTGCCGGT
GCTGGTGCCG CGTACGTCTG GTAA
|
|---|
| Protein sequence | MQYDNAGHTS VTLGGTAAAA PVALTNVAAG TLSASSTDAV NGAQLNTTNQ AVANTSTSVT
NLSASINAGT VGLVQQAGGA PGRGTITVGV QTGGTTVDFA GTNGARTLSG VAAGIAATDV
VNVGQLDAVA GTASNSVQYD KADHTVVTLG GTVAGAPVAL RNVAAGTLSA ASADAVNGAQ
LFATNQAVAS TSTSVTNLSA SIDAGTVGLV RQAGGAPGSG PITVGAQTGG PSVDFAGTTG
PRTLAGVAAG TAATDAVNVG QLSTVAGTAS NSVQYDNAGH TSITLGGTAA AAPVALTNVA
AGTLSAASTD AVNGAQLNTT NQAVASTSRS LMNLSASIDA GTVGVVQQVG GAPGRGAITV
GAQTGGTSVD FSGASGARTL SGVAAGTAAT DAVNVGQLGA VAGVAANAVQ YDNAGHTSVT
LGGAAAAASV ALTNVAAGTL SASSVDAVNG GQLFATNQAV ANTSTVVTNL SNGIAAGTVG
LVQQAGGAPG TGQITVGGQT GGTSVDFSGT DGTRKLSGVA AGTAATDAVN VSQLNAVAGV
ATNAVQYDNA GRTSVTLGGA GAAAPVALTN VAAGALSASS TDAVNGAQLY ATNQALSGTT
STVNALSTGI AAGTIGLVQQ AGGAPGTGMI TIAAKTGGTA IDVSGTSGAR QLKGVAAGTD
ATDAVNVSQL NATISSATAN AVVYDSAARS IVTLGGLGAS LPVTLRNVAA GVLSGNSTDA
VNGSQLYMTN QAVAANTGAI DALTNSLTDV QRSMARNAAQ LQPIVSADAL KYFAASSTGA
PASASGTETV AAGGNALAAG AHSVAIGTGA QAIGSGALAL GANTSAKGSN SIALGQGSAA
SADNTVSIGN SATGLTRTLT NVSVGVAPTD AVNVRQLSDA VGGLRSQIEH DRADANGGSA
SAVAIASLPQ APAPGHSVVS IGGGTYAGQS AVAVGMSTYA GRWILKASGS TNTRGTVAAG
AGAAYVW
|
|---|
| |