| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_6718 |
|---|
| Symbol | |
|---|
| ID | 4454562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008544 |
|---|
| Strand | - |
|---|
| Start bp | 957759 |
|---|
| End bp | 958814 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639698780 |
|---|
| Product | porin |
|---|
| Protein accession | YP_840340 |
|---|
| Protein GI | 116687093 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.6284 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.457172 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGGGT GGTTCCGGAT GGCGGCATGG TGCGGCTGCA GTGCCGTCGC ACCGGCGTTC
GCGCAATCGA GCATGACGCT CTATGGGTCG CTGGACACGG GCGTGACCTA TACGAGCGAC
GTGGCGTCCG CCCCGCGAGG CGGGCGTCAG CTCGCGTTGC AGGCCGGCGT GTCGCGCAAC
GACGTGTGGG GCCTGACGGG TAGGGAGGAT CTCGGCGGCG CCAACTTCGC GGTGTTCCGG
CTGGAGAGCC AGTTCCAGAC GTCGGACGGC GCGCTGACCG TACCGGGCTC CGCGTTCAGT
TCACAAGCGT ACGTCGGGCT CGGCGGTGAC TGGGGGACCG TGACGCTCGG GCGCCAGTTC
GATTTCGTCG GCGATCTGCT GCCGGCCTTC GCGATTGGCG CAAACACGCC GGCTGGCCTG
CTCGCGTGGG GATTGCCGAC GAACGCGTCG GCGGGCGGTG CGCTCGACAA CCGCGTGTGG
GGCGTCCAGG TGAACAATGC GGTGAAGTAC GTGAGCCCGA CATTCGGCGG GGTCGCGTTC
GGCGGCATGT GGGGATTCGG CAACGTGCCC GGCACGGTCG CACGCAGCAG CGTGCAAAGC
GCGATGCTGT CCTACACGCA AGGCGCGTTC AGCGCCGCGC TCGCGTATTT CGGCCAGCAT
GACGTGACCG CCGGCGGCAA TCTGCGCAAC TTTTCGGGCG GTGCCGGCTA CAACGTCGGG
CCGTTTCGTG TCTTCGGGAT GGTGTCGGAC GTCCGGATCA GCGCCGCCGC GCCGTTGCGG
GCCACCACCT ATGACGCCGG GTTGACCTAT GCCGTCACGC CGTCGTTGCA GCTGGGCGGC
GGTTTCCAGT ACCAGCAGCG CGGCGGCGAT ATCGGCTCGG CCAACCAGGT CACGTTGAGC
GCCGACTATT CGCTGTCGAA ACGTACCGGC CTTTACGCGG TATTCGCACG CGGGCACGAC
AGCGCGTATG GCGCGCAGGT CGAAGCGGCG CTCGGCGGGG CGGCGTCCGG CTCGACGCAG
ACCGCCGTTC GGCTCGGGCT GCGGCATCAG TTCTGA
|
|---|
| Protein sequence | MKGWFRMAAW CGCSAVAPAF AQSSMTLYGS LDTGVTYTSD VASAPRGGRQ LALQAGVSRN
DVWGLTGRED LGGANFAVFR LESQFQTSDG ALTVPGSAFS SQAYVGLGGD WGTVTLGRQF
DFVGDLLPAF AIGANTPAGL LAWGLPTNAS AGGALDNRVW GVQVNNAVKY VSPTFGGVAF
GGMWGFGNVP GTVARSSVQS AMLSYTQGAF SAALAYFGQH DVTAGGNLRN FSGGAGYNVG
PFRVFGMVSD VRISAAAPLR ATTYDAGLTY AVTPSLQLGG GFQYQQRGGD IGSANQVTLS
ADYSLSKRTG LYAVFARGHD SAYGAQVEAA LGGAASGSTQ TAVRLGLRHQ F
|
|---|
| |