| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5542 |
|---|
| Symbol | |
|---|
| ID | 4453387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | - |
|---|
| Start bp | 2649765 |
|---|
| End bp | 2651378 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639697603 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_839168 |
|---|
| Protein GI | 116693635 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.390888 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCCT TGCATGCCAT GTCGGCCGTG CTGGCCGCGC TCGCCCTGAC GACGCCCGTC
GCCCACGCCG TGACCGTTCC GTCGAACGTC GCACTCGCTC CCCAACAGGA CCTGACGCGA
CAGGTGCCGG CCGAAGTCGA GTCGCTCGAC CCGGCGCACA TCGAATCGTG GACCGGCAAC
ACGATCGGCC TCGACCTGTT CGAAGGGCTC GCGCGCATCG ACGCGGCCGG CCAGGTCGTG
CCGGGCGTCG CGCTGTCGTG GGAGCGCAAG ACGCCGCAGA CGTGGATCTT CAAGCTTCGC
CACGACGCGA AGTGGAGCAA CGGCCAGCCG GTGACGGCCG CCGATTTCGT CTATTCGTGG
CAGCGCCTCG TCGATCCGAA GACGGGCTCG AAATACACGA TCCTCGTCGA GTTCATCAAG
AACTCGAAGG ACATCATCGC CGGCAAGGCC GCGCCGACCA CGCTCGGCGT GCGCGCGGTC
GACCCGTACA CGCTGGAAGT GACGACCGAC GTGCCCGTCG CGTTCTTCCC CGAACTGACC
GCGATGGCGC CGCTCGCGCC GGTGAACAAG GACGTGGTGA CGAAGTTTGG CGACGCATGG
ACGCGCCCCG GCAACCTGGT CAGCAACGGC GCGTACCAGC TCGTCGACTG GCAGCCGAAC
AACCGCATCG TGGCGACCAA GGACGCGAAG TACTGGAACG CGTCGAAGGT GGTGATCAAC
AAGGTCACGT ACCTGCCGAT CGAAAGCGAC GAAACCGCGA TGCGCATGTA CCAGGCCGGC
CAGATCGACT ACAGCTACTC GATCCCGTCG GGCATCTTCC AGCAGGTCAG CAAGCAGTTC
GGCGCCGAAC TGCGCCCGGG CCTGCAGCTC GCGACCTACT ACTACTACCT GAACAACAGC
GACGCGGCGC TGAAGGACAA GCGCGTGCGC CAGGCGCTGT CGATGGTGAT CGATCGCGAC
GTGCTGACGT CGAAGCTCAC GCAGGCCGGC GAGAAGCCGA TGTACGGGCT GATGCCGAAC
GGCACGAAGG GCGTGCAGCC ATTCACGCCG GAATGGGCGT CGTGGCCGAT GGCCAAGCGC
ATCGCGACCG CGAAGGACCT GCTGAAGCAG GCCGGCTATT CGGATGCGAA GCCGCTGTCG
TTCACGCTCA CGTACAACAC CAACGACCTG CACAAGAAGG TCGCGCTGTT CACCGCATCG
GAATGGCGTA CGAAGCTCGG CGTCACCACG AAGCTCGAGA ACGTCGAGTT CAAGGTGCTG
ATGAAGCAGC GGCATGACGG CAAGGTGCAG ATCGCGCGCG ACGGCTGGTT CGCCGACTAC
AACGACGCGA TGACGTTCTT CGACCTGATC CGCTGCGGCA GCTCGCAGAA CACCGTCGGC
TACTGCAACA AGCAGGTCGA CGCGCTCGTC GAGGAAGGCA ACCAGAAGCT CGACGACAAC
GCGCGCACCG CGCTGCTCAC GCAGGCGCAC GACATGGCGA TGAAGGACAC GCCGATGGTG
CCGCTGTTCC AGTACTCGGC CGACCGTCTC GTGAAGTCCT ACGTCGGTGG CTATTCGCTG
AAGAACGTGA TCGACATGCG TGCTTCGCAG GACATGTACC TGATCAAGCA CTGA
|
|---|
| Protein sequence | MKSLHAMSAV LAALALTTPV AHAVTVPSNV ALAPQQDLTR QVPAEVESLD PAHIESWTGN
TIGLDLFEGL ARIDAAGQVV PGVALSWERK TPQTWIFKLR HDAKWSNGQP VTAADFVYSW
QRLVDPKTGS KYTILVEFIK NSKDIIAGKA APTTLGVRAV DPYTLEVTTD VPVAFFPELT
AMAPLAPVNK DVVTKFGDAW TRPGNLVSNG AYQLVDWQPN NRIVATKDAK YWNASKVVIN
KVTYLPIESD ETAMRMYQAG QIDYSYSIPS GIFQQVSKQF GAELRPGLQL ATYYYYLNNS
DAALKDKRVR QALSMVIDRD VLTSKLTQAG EKPMYGLMPN GTKGVQPFTP EWASWPMAKR
IATAKDLLKQ AGYSDAKPLS FTLTYNTNDL HKKVALFTAS EWRTKLGVTT KLENVEFKVL
MKQRHDGKVQ IARDGWFADY NDAMTFFDLI RCGSSQNTVG YCNKQVDALV EEGNQKLDDN
ARTALLTQAH DMAMKDTPMV PLFQYSADRL VKSYVGGYSL KNVIDMRASQ DMYLIKH
|
|---|
| |