Gene Bcen2424_5417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_5417 
Symbol 
ID4451454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008543 
Strand
Start bp2516147 
End bp2516824 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content67% 
IMG OID639697478 
ProductTetR family transcriptional regulator 
Protein accessionYP_839043 
Protein GI116693510 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.618934 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00324744 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACGAACT ATTCAGGTTT TACTATTCGC ATTGGCAAAT CGCTCATGAC CGACCGCCGA 
AACGCCCCGA TCGCCACGCG CAAGCAGCCT CGGCAGGCGC GCTCGACCCG CCTCGTCGAG
GACGTCCTGC AGGCGGCTAT TCAGGTTTTG GCGAGTGAAG GCGCGCAGCG CTTCACGATG
GCGCGCGTGG CCGAGCGGGC CGGCGTGAGC GTCGGCTCGC TGTACCAGTA CTTCCCGAAC
AAGGCGTCCG TACTGTTCCG GCTCCAGCAC GACGAGTGGC GGCAGACGCA CGACATGCTG
TGCGGGATAC TGCAAGACAC GCGGAAGACG CCGCCCGAGC GGCTGCGCAC CGCCGTCCAC
GCGTTCATCC GTTCGGAATG CGACGAGGCG CCGATGCGGA TCGCCCTCGA CGATGCCGCC
CCGCTCTATC GCGACGCCCC CGAGGCGCAG GACGTGAAGG CCGAGGGCAA CCGGGCGTTC
AGCGCGTTCA TGCGCGAAGC GCTGCCCGAC GTGTCCGACG CCACGCATGC GCTCGCGTGC
GAGCTGATCC TGACGACGCT CACCACGGGC GGCAAGGCGT TCTCCGAAAC GGCGCGCACG
CCGGCGGAAA TCGACGCCTA TTCGGCCGCG ATGGCCGACA TGTTCTGCGC GTATCTCGCG
CATCTCGCGC ACGATTGA
 
Protein sequence
MTNYSGFTIR IGKSLMTDRR NAPIATRKQP RQARSTRLVE DVLQAAIQVL ASEGAQRFTM 
ARVAERAGVS VGSLYQYFPN KASVLFRLQH DEWRQTHDML CGILQDTRKT PPERLRTAVH
AFIRSECDEA PMRIALDDAA PLYRDAPEAQ DVKAEGNRAF SAFMREALPD VSDATHALAC
ELILTTLTTG GKAFSETART PAEIDAYSAA MADMFCAYLA HLAHD