Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_5417 |
Symbol | |
ID | 4451454 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008543 |
Strand | + |
Start bp | 2516147 |
End bp | 2516824 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639697478 |
Product | TetR family transcriptional regulator |
Protein accession | YP_839043 |
Protein GI | 116693510 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.618934 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00324744 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACGAACT ATTCAGGTTT TACTATTCGC ATTGGCAAAT CGCTCATGAC CGACCGCCGA AACGCCCCGA TCGCCACGCG CAAGCAGCCT CGGCAGGCGC GCTCGACCCG CCTCGTCGAG GACGTCCTGC AGGCGGCTAT TCAGGTTTTG GCGAGTGAAG GCGCGCAGCG CTTCACGATG GCGCGCGTGG CCGAGCGGGC CGGCGTGAGC GTCGGCTCGC TGTACCAGTA CTTCCCGAAC AAGGCGTCCG TACTGTTCCG GCTCCAGCAC GACGAGTGGC GGCAGACGCA CGACATGCTG TGCGGGATAC TGCAAGACAC GCGGAAGACG CCGCCCGAGC GGCTGCGCAC CGCCGTCCAC GCGTTCATCC GTTCGGAATG CGACGAGGCG CCGATGCGGA TCGCCCTCGA CGATGCCGCC CCGCTCTATC GCGACGCCCC CGAGGCGCAG GACGTGAAGG CCGAGGGCAA CCGGGCGTTC AGCGCGTTCA TGCGCGAAGC GCTGCCCGAC GTGTCCGACG CCACGCATGC GCTCGCGTGC GAGCTGATCC TGACGACGCT CACCACGGGC GGCAAGGCGT TCTCCGAAAC GGCGCGCACG CCGGCGGAAA TCGACGCCTA TTCGGCCGCG ATGGCCGACA TGTTCTGCGC GTATCTCGCG CATCTCGCGC ACGATTGA
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Protein sequence | MTNYSGFTIR IGKSLMTDRR NAPIATRKQP RQARSTRLVE DVLQAAIQVL ASEGAQRFTM ARVAERAGVS VGSLYQYFPN KASVLFRLQH DEWRQTHDML CGILQDTRKT PPERLRTAVH AFIRSECDEA PMRIALDDAA PLYRDAPEAQ DVKAEGNRAF SAFMREALPD VSDATHALAC ELILTTLTTG GKAFSETART PAEIDAYSAA MADMFCAYLA HLAHD
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