| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_5399 |
|---|
| Symbol | |
|---|
| ID | 4451436 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 2498789 |
|---|
| End bp | 2499499 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639697460 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_839025 |
|---|
| Protein GI | 116693492 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.438865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00269642 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAATG ACGGCGTGGT TGCCGTGGAA AAGGCGCTTT CGCTGCTGGA CTGCTTCAAG
CCGGGCGCCG AATCGCAGTC GCTCGCGACG CTGTCGCAAG CATCCGGCAT GCACAAGACG
ACGGTCTATC GGCTGATGAA CTCGCTGGAG CGAATGGGCT ATGTCGTGCG CGCCCAGTCC
GGCAACTATT CGCTTGGGCA CCGCGTGCTG TACCTCGGCA AGCTGTACGA GCAATCCTTC
CATCTGTCCA CGGTGGTCGA ACCGGCGCTG CACGCGCTGG CCGCGCTGAC GAAGGAAAGC
GCATCGTACT ACGTGCACGA CAACGGGCAG CGGCTTTGCC TGTTTCGGGT CGAGCCGTCC
GAAGGCCTGC GTGAAACGCG GCTCGCGGGC ACGATGCTGC CGCTCGACGA CACGGCCATC
AGCCAGGTGA TCCGTTTCTG GGGTCTTGGC GAACCGATCT ATGACAAGCC GCCCGCACTA
CCCCTCTTCA CCGCGGGTGC ACGCGATGTG CACACGGCAG CGTTCGCGGT GCCGGTCTTC
GGCGCCGGCG ACAAGTTCAT GGCGGCGCTG ACGCTGTCCG GTCCAGCGTC GCGCCTCAGC
GTCGCGCACG AATCGGGTGA ACTGGATCGA CCGCAGCTGG ATGCCGCCGC CGATCTATCG
CGGAAGCTGG GCGCGAGTGT CGCGCTCTGC GAGACCGTCT ACGGCATCTG A
|
|---|
| Protein sequence | MGNDGVVAVE KALSLLDCFK PGAESQSLAT LSQASGMHKT TVYRLMNSLE RMGYVVRAQS
GNYSLGHRVL YLGKLYEQSF HLSTVVEPAL HALAALTKES ASYYVHDNGQ RLCLFRVEPS
EGLRETRLAG TMLPLDDTAI SQVIRFWGLG EPIYDKPPAL PLFTAGARDV HTAAFAVPVF
GAGDKFMAAL TLSGPASRLS VAHESGELDR PQLDAAADLS RKLGASVALC ETVYGI
|
|---|
| |