Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bcen2424_5052 |
Symbol | |
ID | 4452312 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia cenocepacia HI2424 |
Kingdom | Bacteria |
Replicon accession | NC_008543 |
Strand | - |
Start bp | 2077173 |
End bp | 2078126 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639697109 |
Product | substrate-binding region of ABC-type glycine betaine transport system |
Protein accession | YP_838679 |
Protein GI | 116693146 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.244111 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCGA CGAAGATCGC CGCGCTCGCC GCGGCCGTGC TGGCGACCGG CGCGTTCACG CACGCCGCGC TGGCCGAGAC GGAGGCCACG ACCTGCCGGA CCGTGCGTTT CGCGGATATC GGCTGGACCG ACATCACGTC GACCACGGCG CTCGCGTCGA CCGTGTTCGA GGCGCTCGGC TACAAGCCGA CCACGACGAT CGCGTCGGTG CCGATCTCGT TCGCCGGCCT CAAGAGCAAG CAGCTCGACG TGTCGCTCGG CTACTGGTGG CCCGTGCAGC AGAAGCAGCT GCAACCGTTC CTCGACAGCA AGTCGATCAA CGTCGTCGAG CCGCCGAACC TGTCCGGCGC AAAGGCGACG CTCGCGGTGC CGAGCTATGA ATACCAGGCC GGCCTGAAGA CCTTCGACGA CATCGCGAAA CACCGCGCGG AACTCGACGG CAAGATCTAC GGGATCGAGC CGGGCAGCAG CGCGAACGCG ACGATCCAGA AGATGATCGA CACGAACCAG TACGGGCTCG GCGGCTTCAA GCTCGTCGAA TCGAGCGAAG CGGGGATGCT GGTGACGGTC GAGCGCGCGG TCCGCGACAA GAAGTGGGTC GTGTTCCTCG GTTGGGAGCC GCATCCGATG AACATCCAGC TCAGCATGAA CTACCTGTCC GGCGGCGACG CGGCGTTCGG CCCGAACTAC GGCGAAGCGC GCGTGTACAC GCTCACCGCG CCCGACTTCA TCGCGCGCTG CCCGAACGCG GGCAAGCTCG TGACGAACCT GCGCTTCTCG ACGCAGCTCG AGAACCAGCT GATGCAGTCG GTGATGAACA AGACCAAGCC GGCCGAGGCC GCGAAGGCGT ACCTGAAGAA GAACCCGCAG GTGCTCGATC CGTGGCTCGC GGGCGTCAAG ACGTTCGACG GCAAGGACGG CCTGCCTGCC GTGAAGGCGT ATCTCGGCCT GTGA
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Protein sequence | MKSTKIAALA AAVLATGAFT HAALAETEAT TCRTVRFADI GWTDITSTTA LASTVFEALG YKPTTTIASV PISFAGLKSK QLDVSLGYWW PVQQKQLQPF LDSKSINVVE PPNLSGAKAT LAVPSYEYQA GLKTFDDIAK HRAELDGKIY GIEPGSSANA TIQKMIDTNQ YGLGGFKLVE SSEAGMLVTV ERAVRDKKWV VFLGWEPHPM NIQLSMNYLS GGDAAFGPNY GEARVYTLTA PDFIARCPNA GKLVTNLRFS TQLENQLMQS VMNKTKPAEA AKAYLKKNPQ VLDPWLAGVK TFDGKDGLPA VKAYLGL
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