| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_4722 |
|---|
| Symbol | |
|---|
| ID | 4453531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 1707954 |
|---|
| End bp | 1709498 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639696778 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_838349 |
|---|
| Protein GI | 116692816 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0674524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00195148 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTAC CTGAACCGCC GGCCGCCGCG ATCGCCGCCA CCGTGCTCGC GACCGCCGTC
GCGCTGGCCG GCTGCGCGAC GTCGTCGATC GATCTGGCGC CGGAGGCGTC CGACCGCCCG
TGGCAGCCGC AAACGTCCGC CGCGGGCGAC ATCGTGGCGG CGCCGCCGCG CGCATCCGCG
CAAGGTGCGC ATGACTACAC GCTGCCTGCC TCGCCGGCAC TCGCGTCGGT TTCGGCGCCG
GCCGCGCTCG ATGCCGCACA TGCGTACACG CTGCCCGAGC TGATCGATCT GGCCGAATCG
GCCAATCCGC TGACCCGCAT CGCATGGAAC GACGCGCGCA ACGCGGCGCT CGCGGTGGGC
CTCGCCAAGT CCGCCTATCT CCCGCGCCTG TCGGCGACGG CGATGGGTGC GTACCAGGCG
AACCACGGCT CGACGTCGAC GATCCTCGGT GATTCATCGA GCAACACCAC CGCGCACGGC
ACGATTTCGG CGCTGTCGCT GCAATGGCTG CTGTTCGATT TCGGCGGCCG CGCGGCGCGC
GTCGAAGCGG CCGAACAGGC ATCGATCGCG TCGAACGTCG CGTTCACGGC CGTGCACCAG
CAGGTGATCC ACGACGTGAC GGTCTCGTAC TACCGCTACG AAGCCGCCCG CTCGCACGCG
CTCAGCGCGC AACAGGGCCT CACGAACGCC GATGCGATCC TCGCGGCGTC CCGCGCACGG
CTCAAGCACG GCGTCGGCAC GGTCGTCGAA CTCGCGCAGG CGACGCAGAA CCGCGCGCAG
GCGAACCTCG CGCTCGTGCA GGCGAACGGC GCCGAGAGCG ACAGTTACCT CGCCCTCGTC
TCCGCGCTCG GCATCTCGCC GCTGTCGAAG CCGACCATCG CCGCGCTGCC GAAGCGGCCG
CTGCCGCCCG CGCTCGGTTC GTCGGTCGAC ACGATCGTGT CGGACGCGAT CGCGCGCCGC
CCCGACCTGC AGGGCGCGTT CGCGGTCGAA AAGGCCAACC GCGCGAAGAT CAAGGCGGCT
CAAGCCGCGT TCATGCCGAA GATCTTCCTG TCCGCGTCGA CGTCGTATGC GAGCGGCGGT
ACGTCCATCT CCGCGCTGCC GGCGATCGGC GACCAGGCGC CGACCGTCAA CCTGAACGGC
AGCCGCTACG GCGGCGGCGT ATTCCTCGGC GTGACGATCC CGCTGTACGA CGGCGGCCTG
CGCTCGGCCG TGCTGATGCA GGCACGCAAC GACGCGGAAA GCGCATCCGC CCGCCTCACG
CGGACCAAGG AGGAAGCGGT ACGCCAGGTC GTCGCCGCGC AGAACGCGGT GCAGACGAGC
CTGGCGTCGC ACGACGCCGC GAAGGCGCTC GTCGATGCCG CGCAAACGAG CTACGACGCG
GCGCTGACCG CGTACCGGAA CGGCGTCGGC TCGGTCACCG ACGCGACGAT CGCGCAAAGC
CAGTTGCTCG CCGCGCGCAA CGCGGAGGTC GACAGCTATG CCGGCGCATT GTCAGCCGCG
GCCGCGCTCG CACTCGCGAC CGGGACGATC GGCTCGGCGC AGTAG
|
|---|
| Protein sequence | MRLPEPPAAA IAATVLATAV ALAGCATSSI DLAPEASDRP WQPQTSAAGD IVAAPPRASA
QGAHDYTLPA SPALASVSAP AALDAAHAYT LPELIDLAES ANPLTRIAWN DARNAALAVG
LAKSAYLPRL SATAMGAYQA NHGSTSTILG DSSSNTTAHG TISALSLQWL LFDFGGRAAR
VEAAEQASIA SNVAFTAVHQ QVIHDVTVSY YRYEAARSHA LSAQQGLTNA DAILAASRAR
LKHGVGTVVE LAQATQNRAQ ANLALVQANG AESDSYLALV SALGISPLSK PTIAALPKRP
LPPALGSSVD TIVSDAIARR PDLQGAFAVE KANRAKIKAA QAAFMPKIFL SASTSYASGG
TSISALPAIG DQAPTVNLNG SRYGGGVFLG VTIPLYDGGL RSAVLMQARN DAESASARLT
RTKEEAVRQV VAAQNAVQTS LASHDAAKAL VDAAQTSYDA ALTAYRNGVG SVTDATIAQS
QLLAARNAEV DSYAGALSAA AALALATGTI GSAQ
|
|---|
| |