Gene Bcen2424_4157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_4157 
Symbol 
ID4453243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008543 
Strand
Start bp1068415 
End bp1069602 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content67% 
IMG OID639696215 
Productporin 
Protein accessionYP_837786 
Protein GI116692253 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.142098 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00226863 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAGCAC CCGTCAACCG TTATGCAATC CTGATTTTAT CGGCCGCCTC GCTCGGCACG 
ACCGCCGCCC ACGCACAGAG CAGCGTCACG CTGTACGGCG TGGTCGACGA TTCGCTCGCG
TACGTGAACA ACCAGCAGGG GCACTCGAAC ATCTACATGC GCGACGGCAA CCTGTATGCG
TCGAAGTTCG GGCTGCGCGG CGACGAGGAT CTCGGCGGCG GCACGCACGC GATCTTCGAC
CTGCAGGCCG GTTTCAACCT GAATACGGGC GCGCAGGCCG CCGCCGGCAC GCTATTCAAT
CGCCAGGCCT TCGTCGGCCT GCGCAACGCC AGCTACGGTA CGGTCACGGC CGGTCGCCAG
TACACGCCCT ACTTCCTGTT CGTCGGCCCG TACGCGTCGA GCAGCTGGCT GACCGGCGCC
ACCGGCGCGC ATCCGGGCGA CATCGACGGC CTCGACACCA CGATCCGCGT GAACAATTCG
GTTACCTATA CGTCGCCGAC CTTCGCCGGG CTGACCGCGA GCGCGATGTA CGCATTCGGC
GGCATTGCGG GCGCGACCGG CAAGGGCAAC ACGTTCAGCG CCGCGCTGCG CTACGCGAAC
GGGCCGATCG GGATCGCGGC CGGCTACCTG CGGATCAACA GCTCGGGCTC GTCCGCGGGC
TTCCTGAACC CGGCCACCGC ATCGTCGGGC AGCTTCGCGG TGTCCGTGCT GAACCAGGGC
TACCTGAGCG CGAAAGCGGT CGAACAGGTG GCGGCGGCCG GCAACTACAC GCTCGGCGAC
CTGACGATGG GGCTCAACTA TTCGAACGTG AAGTACCTGC CCGGCAACGG CTCGGCGTTC
ACCGACACGG CCGTGTTCAA CACCTACGGC GCGCTTGCCG CATACCGCTT CACGCCGACG
TTCTCGGTGG CCGGCGCATT CGCGTACACG CTCGCATCGA AGGCGAACGG TGTCGCGAGC
GCGGCCCGCT ATCAACAATA TTCGCTGAAG GAGTCGTACA GCCTGTCGAA ACGCACGACG
CTCTACGCGC TGCAGGCGTA CACGCATTCG AGCGGGCAGA CGCTCGGCGC GCAAGGCGCC
GGGCACATCG TCGACGCGGC GCCGATCGTC GGCGATTCGC AGCAGCTCAC GCCGTCGACG
ACGCATGGCC AGTTCGTCGG CATGGCCGGG ATCGCCGTCA CGTTCTGA
 
Protein sequence
MKAPVNRYAI LILSAASLGT TAAHAQSSVT LYGVVDDSLA YVNNQQGHSN IYMRDGNLYA 
SKFGLRGDED LGGGTHAIFD LQAGFNLNTG AQAAAGTLFN RQAFVGLRNA SYGTVTAGRQ
YTPYFLFVGP YASSSWLTGA TGAHPGDIDG LDTTIRVNNS VTYTSPTFAG LTASAMYAFG
GIAGATGKGN TFSAALRYAN GPIGIAAGYL RINSSGSSAG FLNPATASSG SFAVSVLNQG
YLSAKAVEQV AAAGNYTLGD LTMGLNYSNV KYLPGNGSAF TDTAVFNTYG ALAAYRFTPT
FSVAGAFAYT LASKANGVAS AARYQQYSLK ESYSLSKRTT LYALQAYTHS SGQTLGAQGA
GHIVDAAPIV GDSQQLTPST THGQFVGMAG IAVTF