| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3258 |
|---|
| Symbol | |
|---|
| ID | 4453687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 99641 |
|---|
| End bp | 101440 |
|---|
| Gene Length | 1800 bp |
|---|
| Protein Length | 599 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639695323 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_836896 |
|---|
| Protein GI | 116691363 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.246577 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTAGCGG AAATTCTCAA AGAAGCCTCG GCGAACAGGG ACTTTTTGAA GCTTTCTGGC
GGCTGCTTAG CCGTTGCGTT TCTGCAACGG AAACTTGGCC AATGTTCACT AACGTTGCTA
GCACGTTGCA CGTGTTCTTT AATACTGCTA GCGCACGTGT CGCGTGGATT GATAGGGATC
CATATGGCTT CGATCGAAGA GCGGGCCGCT CGAGCAGCGA AGATTGCGTC CGTGCTTCGA
CCGCTTGGCA ACGGCGTGCT TTCCCGACAG CAGGCTGAAC GAGCAGCACA GCTATTAGGC
GTTCACTGCA CCACCGTATA TCGCCTGCGT CGACGTTTCC TCGCAGATCC GGTCGCCAGC
ACATTAGAGC CAAGGCAGCC GGGTAGGGCG ACCGGGGGCA GACTGGACGC CGCCGTCGAA
TGCGTCATCG ACGAGGCCGT GCACGAATGG CTCCCTGATC AGCGACACCT TGCGCATCCT
GCAACTGATC TTGTACTTGA GGTGAAACGT CGCTGCAGCG TTGCAGGTCT ATCGCCTCCA
AGCAGGTCAA CAATTGCTCG ACGGTGGCTC TCCTATCGCG AGCAGGATGC TTTGGCACGA
GCTGCGCTCC CGAACGCTGC AGTTGCCCCT GGCACATTCC AGGTCCGACA TCCGTTAGAT
ATCGTGCAGG TTGATCACAC GCAAGCGGAC ATCCTGCTCG TTAGCGAACT GGACGGACAG
ATTATCGGTC GACCGTGGCT GTCTGTGGCT CTCGACGTTG CTACGAGATG TGTGCTTGGC
TTTTATGTCG CAATGGAGAG GCCGGGGGCT GCGACGGTAA GCTTGCTCCT CTCGCGCGTA
GTTCTGCGCA AAGAGCCGTG GCTCGAAAGA CTAGGCGTTG AGGCTGACTG GCCGATGCGC
GGTATCCCTC GAACGCTGCA TCTTGATAAC GCGGCCGAAT TCAAAAGCCG TGCCCTTCGC
AGTGGATGCC GCGAGTACGG CATTGAACTG ATGTACCGAC CGGTGGGCAA GCCGCACTTT
GGTGGCCACA TCGAGCGGCT GAACAGGACC TTGATGGAGC GCGTACGTGG CCTCCCTGGT
TCGACTGGAT CGTCAGTCAA AGGGCGCAAG GCGCGCCAGG CCGAAAAGAC AGCTTCGCTT
ACGTTGAAGC AGTTCGAGCA GTGGCTGGCT GTCGAGATCG GTAGGCGTTA TCACTGCGGC
CCCCACCGCG GTTTGTTGGG ACTTCAGCCC GCGCAAAAGT GGCAGGAAAC ATGGCGAGCA
GCGGATTCAC GATGCTTGCC AGCTCAACCG GATGCCGAAC TGAAGTTTCT GATCCGGTTC
CTGCCAGTCG CATCCCGGAC CATTCAGCGG GACGGCCTCA AGCTCTTCCT GATCCGCTAT
TGGCATCCCT TGTTCGCGGC ATGGCGGGAA ACACGCCGGT CCGTGACGGT CCGCTATCAC
CCAGAAGACC TCTCGCGCAT CTTCGTAAGC GCTGGCAGAG GCAGTTTCGT TGAAGTGCGA
TACGCGGACT TGCGTCGGCC TCCCATCTCG CTGTTCGAAC AGCGAGCAGC TTTGCGAGCT
ATCCGGGCTA GGGGACAACG GGCAGTATCG GAGAGGGAGA TATTCGAGAC TGTTGAGCAG
CAGCGACAAC TGGTCGTCAC TTCCCAGCGG GCTACTCGAG CGCGACGCCG CATGGCACGT
CAAGCTGGCG GTTTGGTTCC GAAGAGCAGC ATCGAAGATC TCTCACTCAC TGAACAGCGG
CAGGTCGAGC AGGTAAACTA CGACGCACCA GTTACCGCGT ATGACGTTGA ACAGTGGTAG
|
|---|
| Protein sequence | MLAEILKEAS ANRDFLKLSG GCLAVAFLQR KLGQCSLTLL ARCTCSLILL AHVSRGLIGI
HMASIEERAA RAAKIASVLR PLGNGVLSRQ QAERAAQLLG VHCTTVYRLR RRFLADPVAS
TLEPRQPGRA TGGRLDAAVE CVIDEAVHEW LPDQRHLAHP ATDLVLEVKR RCSVAGLSPP
SRSTIARRWL SYREQDALAR AALPNAAVAP GTFQVRHPLD IVQVDHTQAD ILLVSELDGQ
IIGRPWLSVA LDVATRCVLG FYVAMERPGA ATVSLLLSRV VLRKEPWLER LGVEADWPMR
GIPRTLHLDN AAEFKSRALR SGCREYGIEL MYRPVGKPHF GGHIERLNRT LMERVRGLPG
STGSSVKGRK ARQAEKTASL TLKQFEQWLA VEIGRRYHCG PHRGLLGLQP AQKWQETWRA
ADSRCLPAQP DAELKFLIRF LPVASRTIQR DGLKLFLIRY WHPLFAAWRE TRRSVTVRYH
PEDLSRIFVS AGRGSFVEVR YADLRRPPIS LFEQRAALRA IRARGQRAVS EREIFETVEQ
QRQLVVTSQR ATRARRRMAR QAGGLVPKSS IEDLSLTEQR QVEQVNYDAP VTAYDVEQW
|
|---|
| |