| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_3250 |
|---|
| Symbol | |
|---|
| ID | 4453661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008543 |
|---|
| Strand | + |
|---|
| Start bp | 90312 |
|---|
| End bp | 91949 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639695315 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_836888 |
|---|
| Protein GI | 116691355 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0550813 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.598947 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGA CGGCGGAAAA TCCCTATACG ATCGGACTCG AGCGCGACCC GGCGAACTTC
ATTGCCTTGT CGCCGCTGAC GTTTCTCGAA CGCGCCGCGT CCGTCTGGCC GGAGCGCACG
GCCATCGTGC ACGGCACGAT ACGCCGCGAC TGGGCCGAAA CCTACCGGCG GTGCCGGATG
CTCGCCGGCG CGCTGCGCGG GCGCGGCATC GGCAACGGCG ATACGGTGGC GATGATCGCG
GCCAATACGC CCGAACTGTT CGAGGCACAT TTCGGTGTAC CGCTTTGCGG CGCTGTCCTG
AACACCATCA ACACACGGCT CGATGCCGAC ACGATCGCGT TCATTCTCGG CCACGGCGAC
GCGAAGCTGC TGATCACCGA CCGCGAATTC TCCTCGACGG TGAAGAAGGC CCTGGCACGG
CTCGGCCGCG CCATTCAGGT CATCGACATC GACGACCCAC AGTTCGGAGA AGGCGATCTG
CTCGGCGAAA AAGACTACGA GGCGTTGCTG CAGGAGGCCG CGCACACAGA ATTTTCTGTC
GCGATGCCGG AAGACGAATG GCAGGCCATA TCGCTGAACT ACACATCCGG CACGACGGGC
AATCCCAAGG GCGTCGTGTA TCACCATCGC GGCGCATATC TGAACGCAGT ATCGAACGCA
CTATCGTGGC ATCTGGACGA GGACACGACC TATCTATGGA CCTTGCCGAT GTTTCACTGC
AATGGCTGGT GCTTTCCGTG GACCATGGCG TTGGTGGCCG GCACCAGTGT TTTTCTGCGC
CATACGCGGG CCGAGCGGAT TCTCGCCGCC ATCCGCACCG AGGCGGTCAC GCATTTTTGT
GCGGCGTCCG TAGTGTTGAA CATGATCAAT AACGCCGCGC CGGAGCTGAA AGCCGGCATC
CGTCATGGAG TCAAGGTCAT GACCGGCGGT GCGCCGCCGC CCGCTTCGGT GATCGCCGGC
ATGGAGCGCA TGGGCTGGGA CGTGACGCAC GCCTACGGGT TGACCGAGTC CTATGGGCCG
GTCGTGCAAT GCGTGTGGCG CGACTCGTGG AATGCACTCG ATCTCGATGC GAAAGCGCGG
CTCAAGGCCC GCCAGGGAGT GCGCGGCCCC GCTCTCGAGG CAGTGATGGT AGCCAGCCCC
GATACGCTGG AGCCTGTTCC AAAAGACGGG CAAACGCTCG GCGAGGTATT TCTGCGCGGC
AACAACGTGA TGAAGGGCTA CCTGAAGAAT TCGGACGCCA CCGTGGAGGC ATTTTCCGGC
GGGTGGTTTC ACACGGGCGA TCTCGCGGTA TGGCATCCCG ATGGCTACCT GGAAATCAAG
GATCGCTCGA AGGACATCAT CATCTCGGGA GGCGAAAACA TTTCGTCGAT CGAGATCGAG
GACATACTGT ATTCCCATCC CGCCGTTCTG GAGGCGGCAA TCGTCGCGCG TCCCGACGAC
AAGTGGGGCG AGACACCTTG TGCTTTCATC GCGCTCAAAG ACGATTCGGC GGTGACCGAA
GCGGACATCA TCGCGTTTTG CCGCGAGCGG CTGGCACATT TCAAGGTGCC CAAGACCATC
GTGTTCTCGC CGCTGCCGAA GACAGCGACC GGCAAGATCC AGAAGTTCCA CTTGAGGGAG
CGGGCGCGCC AGCTGTGA
|
|---|
| Protein sequence | MKTTAENPYT IGLERDPANF IALSPLTFLE RAASVWPERT AIVHGTIRRD WAETYRRCRM
LAGALRGRGI GNGDTVAMIA ANTPELFEAH FGVPLCGAVL NTINTRLDAD TIAFILGHGD
AKLLITDREF SSTVKKALAR LGRAIQVIDI DDPQFGEGDL LGEKDYEALL QEAAHTEFSV
AMPEDEWQAI SLNYTSGTTG NPKGVVYHHR GAYLNAVSNA LSWHLDEDTT YLWTLPMFHC
NGWCFPWTMA LVAGTSVFLR HTRAERILAA IRTEAVTHFC AASVVLNMIN NAAPELKAGI
RHGVKVMTGG APPPASVIAG MERMGWDVTH AYGLTESYGP VVQCVWRDSW NALDLDAKAR
LKARQGVRGP ALEAVMVASP DTLEPVPKDG QTLGEVFLRG NNVMKGYLKN SDATVEAFSG
GWFHTGDLAV WHPDGYLEIK DRSKDIIISG GENISSIEIE DILYSHPAVL EAAIVARPDD
KWGETPCAFI ALKDDSAVTE ADIIAFCRER LAHFKVPKTI VFSPLPKTAT GKIQKFHLRE
RARQL
|
|---|
| |