Gene Bcen2424_3008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_3008 
Symbol 
ID4450771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008542 
Strand
Start bp3320495 
End bp3321616 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content66% 
IMG OID639695074 
Productporin 
Protein accessionYP_836649 
Protein GI116691026 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAGA CCACCCGACT CGCAGTCATC GCAGGGGGCG CGGCGCTGGC CTTCGCCAGC 
CAGTACGCAG CAGCACAAAG CTCGGTCACG CTCTGGGGCG TCGCCGACGC CAGCATTCGT
TACCTGACCA ACGCCAACGC CAAGAACGAC GGCCTGCTGT CGATGACCAA CGGCGCGATC
ACGAACAGCC GCTTCGGCAT CTACGGCACG GAAGATCTCG GCGGCGGCCT GAAGGCCGTG
TTCAACCTCG AGAGCGGCGT GAACCTGCAG AACGGCGCGT TCGCCGACAG CGGCCGCCTG
TTCAACCGCG CGGCGTACGT CGGCCTGCAG AGCCCGTACG GCACGGTGAC CCTCGGTCGC
CAGAAGACGC CGCTGTTCGA CCTGCTGTCG GACACCTACG ATCCTCTGAC GGTCGGCAAC
TACCTCGAAA ACGCGTGGCT GCCGGTCGCA CTCGGCGGCG GCCTGTATGC GGACAACCAG
ATCAAGTACA CGGGCAAGTT CGAGGGCCTG ACGGCGAAGG CGATGTACTC GACCGGCACC
AACTACGAAT CGACCGGCGC CGGCGGCTTC TCGGGCCAGA TTCCGGGTTC GCTCGGCAAG
GGCAATGCGT GGGGCGTGTC GCTGTCGTAC GTGATGGGCC CGCTCAGCAT CGCGGCCGGT
GCGCAGCAGA ACAGCGACAA CTCGGCGCGC AAGCAGACGA TCTACCACGC GAACGTCGTG
TACGCGTTCA GCAAGGCGAA GATCTACGCG GGCTACCTGC GCTCGAAGGA CGACACGGGC
TTCGTCGACA GCCTGCTCGC GCAGCAGTCG ATTCCGGTCG CGAAGGGCAC GGGCCGGATC
GACGACGGTC CGTTCGCGGG CGTGAGCTGG CAGGTCAGCG CGCCGCTGAC GCTGACGGGC
GCGTTCTACT ACGACCACAT GCGCAATGCG ATGACCACGA ACGGCACGCT CGCGAGCGGC
AACCGCTACG CGATCGTCGG CATCGCCGAG TACGCGCTGA GCAAGCGCAC CGAAATCTAC
GGCACCGTCG ACTTCAACAA GACGAACGGC GCGGCGAACG TCGAGCTGCC CGGCCGCAGC
AACCAGACGG GCATCGCGAT CGGCCTGCGC AATATCTTCT GA
 
Protein sequence
MKQTTRLAVI AGGAALAFAS QYAAAQSSVT LWGVADASIR YLTNANAKND GLLSMTNGAI 
TNSRFGIYGT EDLGGGLKAV FNLESGVNLQ NGAFADSGRL FNRAAYVGLQ SPYGTVTLGR
QKTPLFDLLS DTYDPLTVGN YLENAWLPVA LGGGLYADNQ IKYTGKFEGL TAKAMYSTGT
NYESTGAGGF SGQIPGSLGK GNAWGVSLSY VMGPLSIAAG AQQNSDNSAR KQTIYHANVV
YAFSKAKIYA GYLRSKDDTG FVDSLLAQQS IPVAKGTGRI DDGPFAGVSW QVSAPLTLTG
AFYYDHMRNA MTTNGTLASG NRYAIVGIAE YALSKRTEIY GTVDFNKTNG AANVELPGRS
NQTGIAIGLR NIF