| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_2971 |
|---|
| Symbol | |
|---|
| ID | 4449705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | + |
|---|
| Start bp | 3284056 |
|---|
| End bp | 3285897 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639695037 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_836612 |
|---|
| Protein GI | 116690989 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.900441 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCGC TCCCCTCCGA TTCCGCTGTC GCCCGCACTA CGCGCCTGAT CGCGGAACGC
GCGCTCGCCG CCGTGTTCCA GCCGATCGTC GACCTCGGAT CGGGGACGGT CATCGGTTAC
GAAGGGCTGA TCCGCGGCCC GCGCGGCACC GACCTCGAGC CGCCCGCCGC GCTGTTCGCG
CAGGCCGCGC GCGACGGCGA AACCATCGCG CTCGAACGGG CCGCCGCGCT CACCTGCCTC
GACGCGTTCG CGGCGCTCGG CTGCGACGGC AAGCTGTTCC TCAATTTCAG CGCGGGCACC
ATCCTCACGC TCGCCAGCGA ACGCGAGCGC GCACGTCAAT TCCTCGGCCG CGCGCGGATC
GGCGCGGAGC GCATCGTGAT CGAGCTCACC GAGCAAAACG CGATTCCCGA TCTCGCGGAC
ATCGGGCCGG CGGTCGCATC GTTGCGCGAC GCCGGCATCC AGTTCGCGCT CGACGACTAC
GGCACCGCGA ACGCCAGCAT GAACCTGTGG CTGCGCCTGC ATCCGGACGT CGTGAAGATC
GATCGCTTCT TCATCCATGA CATCGCGCGC GATCCGCTGA AGTTCGAAGC CGTGAAGGCG
ATGCAGCACT TCGCGCACGC GAGCGGCGCG AAGCTGATCG CGGAAGGCAT CGAGAATGAA
TGCGACCTGA TCGTCGTGCG CGACATGGGC ATCTGCTGCG TGCAGGGCTT CCTGCTCGGC
CGGCCGAACG CGCAGCCGTC GCGGGTCGTC GCGCCGGCCG CGCGCGACGC GATCCGCGCG
CCGCACATCG CGGTGTTTCC CGGCGTGACG CGCGCGGTAC GGCCGGCCGG CACGATCGCC
GGAAAGATGC TCGTGCCCGC CCCGGCGCTG CCGCGCGACG CGACCAGCAA CGACGTGCTC
GAGCTGTTCA ACCGGATGCC CGACCTGCAC GCGGTCGCGC TCGTCGAGCG CGGGCGGCCG
GTCGCGCTCG TGAATCGGCG CGGCTTCATC GACCGCTTCG CGCTGCCGTA TCACCGCGAG
GTGTTCGGCA AGAAACCGTG CCTGCAGTTC GCGAACGACG CGCCGCTGAT GATCGACAAC
GCGACCACCT TCGAACAGCT CGCGATGCTG CTCGCGAGCC ACGACCAGCG CTATCTCGCC
GACGGCTTCG TGATCACCGA GCACGGCCGC TATGTCGGGC TCGGCACCGG CGAGAGCCTG
GTACGCGCGG TGACCGAGAT GCGCATCGAG GCCGCGCGCT ACGCGAATCC GCTGACCTTC
CTGCCCGGCA ACATCCCGAT CAGCGCGCAC ATCGACCGCC TGCTCCAGCG CGACGCCGGC
TTTCACGCGT GCTACGTCGA CCTGAACCAG TTCAAGCCGT TCAACGACCA GTACGGCTAC
TGGCAGGGCG ACGAAGTGCT GAAGTTCGCC GCGACGGTGC TGGCCGGCGT GTGCGATCCG
CAACGCGACT TTCTCGGCCA CGTCGGCGGC GACGATTTCC TCGTGCTGTT CCAGCGCGAC
GACTGGCGCG AGCGCGCCGC CGACGCGATC GCGCGCTTCA ACGACGGCGC GCAACTCTTC
TACACGCAGG TCGACCGGCA GGCGGGCGGG CTGCGCGGCG AGGACCGCCA CGGCAATCCG
GCGTTCTTCG GCTTCGTGAC GATGGCGATC GGCGCGGTCG GCGTGCCGGC CGGCGCGCAC
GGCGCGAAAC GCTACGGCAG CGACGAGATC GCGTCGGTCG CGGCGCTCGC GAAGCGGCGG
GCGAAGCAGC AACCGGACGG GCTCGCGGTG GTCGATCTCG ATGCCGGCCG CGCCGCGCTG
CGCGATCGCG GCGAACCGCC GGCCGTGGCG GTGGCGGGCT GA
|
|---|
| Protein sequence | MPALPSDSAV ARTTRLIAER ALAAVFQPIV DLGSGTVIGY EGLIRGPRGT DLEPPAALFA
QAARDGETIA LERAAALTCL DAFAALGCDG KLFLNFSAGT ILTLASERER ARQFLGRARI
GAERIVIELT EQNAIPDLAD IGPAVASLRD AGIQFALDDY GTANASMNLW LRLHPDVVKI
DRFFIHDIAR DPLKFEAVKA MQHFAHASGA KLIAEGIENE CDLIVVRDMG ICCVQGFLLG
RPNAQPSRVV APAARDAIRA PHIAVFPGVT RAVRPAGTIA GKMLVPAPAL PRDATSNDVL
ELFNRMPDLH AVALVERGRP VALVNRRGFI DRFALPYHRE VFGKKPCLQF ANDAPLMIDN
ATTFEQLAML LASHDQRYLA DGFVITEHGR YVGLGTGESL VRAVTEMRIE AARYANPLTF
LPGNIPISAH IDRLLQRDAG FHACYVDLNQ FKPFNDQYGY WQGDEVLKFA ATVLAGVCDP
QRDFLGHVGG DDFLVLFQRD DWRERAADAI ARFNDGAQLF YTQVDRQAGG LRGEDRHGNP
AFFGFVTMAI GAVGVPAGAH GAKRYGSDEI ASVAALAKRR AKQQPDGLAV VDLDAGRAAL
RDRGEPPAVA VAG
|
|---|
| |