| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_2316 |
|---|
| Symbol | |
|---|
| ID | 4449789 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | - |
|---|
| Start bp | 2574910 |
|---|
| End bp | 2576472 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639694380 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_835960 |
|---|
| Protein GI | 116690337 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG GCCCGGCCGG CCTGACGCAC GATGTCCCCG CCGCGCCTTT TGAGCGAAAC
GCCACCATGT CCGATTCTGT CGCCAAGCCC GTCGACGCAA CCTTCGATCA ATTCGGCCTT
GCCCCCGATA TCCTGAAAGC CATTGTGGAG CAGGGCTATA CGACGCCGAC GCCGATCCAG
GCGCAGGCCA TTCCGGTCGT GCTCGCCGGC CGCGACGTCA TGGGCGCCGC GCAAACGGGC
ACCGGCAAGA CCGCGAGCTT CTCGCTGCCG ATCATCCAGC GTCTGCTGCC GCAGGCCAAC
ACGAGCGCGT CTCCGGCGCG CCACCCCGTG CGGGCGCTGA TCCTCACGCC GACCCGCGAA
CTCGCCGACC AGGTCGCCGC GAACGTGCAC GCATATGCGA AGCACACGCC GCTGCGCAGC
GCGGTGGTGT TCGGCGGCGT CGACATGAAT CCGCAATCGG CCGAACTGCG CCGCGGCGTC
GAGATCCTGA TCGCGACCCC GGGCCGCCTG CTCGACCACG TGCAACAGAA GACGGCGAAC
CTCGGCCAGG TGCAGATCCT CGTGCTCGAC GAAGCCGACC GGATGCTCGA CATGGGCTTC
CTGCCCGATC TGCAGCGCAT CCTGAACCTG CTGCCGAAGG AGCGTCAGAC GCTGCTGTTC
TCCGCCACCT TCTCGGGCGA AATCAAGAAG CTCGCGTCGA CCTATCTGCG CAACCCGCAG
ACGATCGAGG TCGCGCGCAG CAACTCGACG AACGCGAACG TCACGCAGAT CGTCTACGAC
GTCGCCGAAG GCGACAAGCA GGCGGCCGTC GTGCAATTGC TGCGCGATCG CGGCCTCAAG
CAGGTGATCG TGTTCTGCAA CAGCAAGATC GGCGCGAGCC GCCTCGCGCG CAATCTCGAA
CGCGACGGCG TGGTCGCGTC GGCGATTCAC GGCGACAAGA CGCAGATCGA GCGGATGCAG
GCACTCGACG CGTTCAAGCG CGGCGAGATC GAGGCGCTGG TCGCGACCGA CGTGGCCGCG
CGCGGCCTCG ACATCGCCGA GCTGCCGGCC GTGATCAACT TCGACCTGCC GTTCAGCGCG
GAAGACTACG TGCACCGGAT CGGCCGTACC GGCCGCGCGG GCGCGACGGG CGACGCGCTG
TCGCTGTGCA GCCCGAACGA GCGCAAGCAA CTCGCCGATA TCGAGAAGCT GATCAAGCGT
CCGCTCGACG TGCAGACGCT TACGATCGAC AAGCCGGCAC GCCAGCGTCA CGACGAACGT
GGCGGCGAGC GCAACAACAG TGAGCGCGGC GGCGAACGGG GTGGCGAACG CGGCGGTCGG
CGCGATCGCG ACGAGCATCG CGGTGCATCG GGCCGCCGCT CGGGCAGCAC CGAGCGCGGC
GGCCATCATC GCCGCCACGA AGCACCGGTC GACGATTTCT TCCTGAAGCC GTACGAGCCG
TCGGCGTCGG CGAAGCAGCC GGACGATGCG CAGCCCGCGC AGCAGCCCGA GAAGAAAGGG
CCGAAGCGCC AGGTTGCCGC GCTGCTCGGT GGCTTCGGGA TGCCGCGCAA GCCGTCGGCG
TAA
|
|---|
| Protein sequence | MSAGPAGLTH DVPAAPFERN ATMSDSVAKP VDATFDQFGL APDILKAIVE QGYTTPTPIQ
AQAIPVVLAG RDVMGAAQTG TGKTASFSLP IIQRLLPQAN TSASPARHPV RALILTPTRE
LADQVAANVH AYAKHTPLRS AVVFGGVDMN PQSAELRRGV EILIATPGRL LDHVQQKTAN
LGQVQILVLD EADRMLDMGF LPDLQRILNL LPKERQTLLF SATFSGEIKK LASTYLRNPQ
TIEVARSNST NANVTQIVYD VAEGDKQAAV VQLLRDRGLK QVIVFCNSKI GASRLARNLE
RDGVVASAIH GDKTQIERMQ ALDAFKRGEI EALVATDVAA RGLDIAELPA VINFDLPFSA
EDYVHRIGRT GRAGATGDAL SLCSPNERKQ LADIEKLIKR PLDVQTLTID KPARQRHDER
GGERNNSERG GERGGERGGR RDRDEHRGAS GRRSGSTERG GHHRRHEAPV DDFFLKPYEP
SASAKQPDDA QPAQQPEKKG PKRQVAALLG GFGMPRKPSA
|
|---|
| |