| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_1835 |
|---|
| Symbol | |
|---|
| ID | 4447916 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | + |
|---|
| Start bp | 2038603 |
|---|
| End bp | 2039955 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639693879 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_835479 |
|---|
| Protein GI | 116689856 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.967793 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGGCG ACATCCGCCG GATCGTCGGT CTCGCGTGGC CGGTGCTGGT CGGCCAGCTC
GCGATCATCG CGTTCGGCGT GATCGACACC GCGATGGTCG GCCGCTACTC GGCCGTCGAT
CTCGCCGCGC TCGGGCTCGG CTCGTCGATC TACGTATCGA TCTACATCGG CCTGACGGGT
ATCCTGTCCG CGCTGCAGCC GATCACCGGG CAACTGTACG GCGCGCGGCG CTATGCCGAG
ATCGGCGAGG AAGTGCGCCA GGCGCTGTGG CTCGCGCTGC TGCTCTCGAT TCCGGGCTTC
CTGCTGCTGC ATTTTCCCGA GCCGCTGCTG CGCGTCGCGC ACGCGCCCGC CGCGCTGCAC
GATCGCACCG TCGACTACCT GCGCGTCCTG TCGTACGGGC TGCCCGCCAG CCTCGTATTC
CGCATCTATA ACGCGCTGAC CAACGCGGCC GGCAAGCCGC GGCTCGCGAT GATCCTCCAG
ATCGGCGCGC TGCTGCTCAA GTTTCCGCTG AACGTGTGGT TCATCTTCGG CGGCTTCGGC
GTACCGGCGC TCGGCGGCCC CGGCTGCGGG CTGGCCAGCA CGCTGATCAA CTGGGCGCTC
GCGCTGATCG GCTACACGCT GCTCGCGAAG CTCGACGTGT TCGCGCCGCT CGCGATCTTC
TCGCGCTTCT GCTGGCCCGT CTGGGCGCGC CAGAAGGCGA TCCTGAAGCT CGGCGTGCCG
ATGGGCCTGT CGTACCTGAT CGAGGTCACG TCGTACACGT GCATGGCGCT GTTCATCGCG
CAGTTCGGCA CGACGACGCT CGCCGGCCAC CAGATCGCCG GCAACATCGG CGCGGTGCTG
TACATGACGC CGCTGTCGAT CGGCGTGGCG GCGTCGACGC TGGTCGCGCG CGCGCTCGGC
GCGGGACGCG CCGAGGAAGC CCGGCTGCTC GGCCGGCACA GCGTGTTCTT CGCGTGCGGC
GTGGCGGCCG CCTACGGCGT GCTCGTGTTC GCGCTGCGCC CGCTGATCAT CGGCGGCTAT
ACGCCGAACC CGGCCGTCGC CGCGGCCGCG ATGCCGCTCG TCGCGATCGT CGCGTGCTAC
CACATGTTCG ATGCGCTGCA GGTCACGTCC GCGTTCGTGC TGCGCGCGTA CAAGGTGGCG
GTCGTGCCGA CCGTGATCTA TGCGGTCGCG CTGTGGGGTG TCGGACTCAG CGGCGGCTAC
GTGCTCGGCT TCGACGTGGG CGGGATCGCG CCCGCGTGGC TGACCGGCGC GCGCGGCTTC
TGGTTCGCGA ACACGGTCAG CCTGATGCTC GCGGGCGCGG GGCTCGTGCT GTACCTGCGC
CGCATCAGTC GCGCGCACGC CGCCTTGGCC TGA
|
|---|
| Protein sequence | MFGDIRRIVG LAWPVLVGQL AIIAFGVIDT AMVGRYSAVD LAALGLGSSI YVSIYIGLTG
ILSALQPITG QLYGARRYAE IGEEVRQALW LALLLSIPGF LLLHFPEPLL RVAHAPAALH
DRTVDYLRVL SYGLPASLVF RIYNALTNAA GKPRLAMILQ IGALLLKFPL NVWFIFGGFG
VPALGGPGCG LASTLINWAL ALIGYTLLAK LDVFAPLAIF SRFCWPVWAR QKAILKLGVP
MGLSYLIEVT SYTCMALFIA QFGTTTLAGH QIAGNIGAVL YMTPLSIGVA ASTLVARALG
AGRAEEARLL GRHSVFFACG VAAAYGVLVF ALRPLIIGGY TPNPAVAAAA MPLVAIVACY
HMFDALQVTS AFVLRAYKVA VVPTVIYAVA LWGVGLSGGY VLGFDVGGIA PAWLTGARGF
WFANTVSLML AGAGLVLYLR RISRAHAALA
|
|---|
| |