Gene Bcen2424_1661 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBcen2424_1661 
Symbol 
ID4449175 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia cenocepacia HI2424 
KingdomBacteria 
Replicon accessionNC_008542 
Strand
Start bp1847264 
End bp1848772 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content67% 
IMG OID639693706 
ProductTPR repeat-containing protein 
Protein accessionYP_835306 
Protein GI116689683 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0601508 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCCC ACCGCGACAC TCTTCCGATG GACGATGCGG CCGTCACGCC GGTCAGGGAA 
CACTACGTAC AGGGCCGATT CGACTCCGCG ATCCAGGCGG CGGAATCGCT CCTCGCGCAG
CACGGCGATC ACGGTGAATT GCTGAACCTC GCGGGCGTGT GCCATTTGAA GCTCGGCAAC
CTCGTCGCCG CCGAGGCGTG CCTCGAGCGG GCAGCGCACG CGGCGCCCCG GTCGGCCGAT
ATCGACAACA ACCTGGGCGT GCTCTATCAG TCGAGCGGGC GGGATGCCGA CGCCGAGCGG
GCGTTCGTGC GTGCCGTTTC GAAAGCACCG GGCCACGGCC AGGCGCACCT CAATCTCGGC
ATGTTGTTGC GGTCCAGGCA TCGTCTGGAA GAGGCGGAAC GGGCGATCCG GATCGCCGTC
GAACAGACGC CCGGCGATCA TGCGGCGCTG AACGCGCTCG GCCTGGTGTT GAAGGACCTG
GGCCGCTACG ACGAAGCCGA AGCGGCCTAT CGGCAGGCGC TGGCGCTCGA GCCCGGGCGT
GCCGAATACC GGCTCAATCT GGCGAATGTG CTGCTGCACC GGAACGACTG GATCGCGGGG
TTGCCGCTCT TCGAAGCGCG TCACGCCCCC GATCTCAACG GCGCATTTTC CGACGCGCCC
GCCGTATCGT TCCCGCAGTG GCAGGGCGAG CCGATCGACG GCGCGTCGCT GCTGATCTGG
CCGGAACAGG GGCACGGCGA CCAGATCCAG CTGGTCCGCT ATGTCAAAAA ACTCCGGATG
CTCGGGGCGA AACGGATCAC GCTGGTGTGC TCGGCCGCGA CGCAGCGGCT GTTCGCGACG
CTCCCCGAAG CGGATGCCGT CGTGGCGCGC GACAGGTTCG ATCCGGCCGC CTGCCCGCGT
CACGATTTCT GGACTTATGT GTGGAGTATT CCCGTCAATC TGCGGGAATC GCCGGCGTCC
ATTCCGGCCA CGCTGCCTTA TCTGCACGCG CCTCGGCATG CGGCGTCGAA ATGGGACCGG
CTGATGCCCA AAGGGCGCCT GCGCGTCGGC CTGGTGTGGC AAGGCAATCC CGGTCACGCG
AACGACCGCG TGCGCTCGCT GCCCGGCCTG CAGACGCTCG CGCCGCTGTG GGACATCGAC
GGCGTCACGT TCGTCAGTCT TCAGAAGGGC GCGAACGAAG CCGATCTGCG TGCCGGAATC
GGCGATCGCT TCATCGTCAA TCTGGGCAAC CGGACCACCG ATTTCGCCGA TGTCGCCGCG
ATCGTCGCGC GGCTCGATCT CGTCATCGGC GTCGATACCG CCGTGATGCA CCTGAGCGCG
GTGCTCGGCA AGCCCGCGTG GATTCTGCTG TCGAACGTGG GCACGGACTG GCGCTGGAGC
GGCGCGGGCA CGACTTCCGT GTGGTACCCG GACGTCGTCA CGCTGTTTCG GCAGGCGGCG
ACGGAAACGG ACTGGTCCGG CGTGGTCGCG CGCGTTTCGC AGGCGTTGTC CGCGATGCGT
GCGACATAG
 
Protein sequence
MQPHRDTLPM DDAAVTPVRE HYVQGRFDSA IQAAESLLAQ HGDHGELLNL AGVCHLKLGN 
LVAAEACLER AAHAAPRSAD IDNNLGVLYQ SSGRDADAER AFVRAVSKAP GHGQAHLNLG
MLLRSRHRLE EAERAIRIAV EQTPGDHAAL NALGLVLKDL GRYDEAEAAY RQALALEPGR
AEYRLNLANV LLHRNDWIAG LPLFEARHAP DLNGAFSDAP AVSFPQWQGE PIDGASLLIW
PEQGHGDQIQ LVRYVKKLRM LGAKRITLVC SAATQRLFAT LPEADAVVAR DRFDPAACPR
HDFWTYVWSI PVNLRESPAS IPATLPYLHA PRHAASKWDR LMPKGRLRVG LVWQGNPGHA
NDRVRSLPGL QTLAPLWDID GVTFVSLQKG ANEADLRAGI GDRFIVNLGN RTTDFADVAA
IVARLDLVIG VDTAVMHLSA VLGKPAWILL SNVGTDWRWS GAGTTSVWYP DVVTLFRQAA
TETDWSGVVA RVSQALSAMR AT