| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_1546 |
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| Symbol | |
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| ID | 4448947 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008542 |
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| Strand | + |
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| Start bp | 1711322 |
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| End bp | 1713805 |
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| Gene Length | 2484 bp |
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| Protein Length | 827 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639693589 |
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| Product | ribonuclease R |
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| Protein accession | YP_835191 |
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| Protein GI | 116689568 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0569328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGCAAAT ATCCGTACCC CATTCCGAGC CGTGAAGAGA TTCTCGGCGT GCTGCGTACG
AGCGACGCGC CGCTGGCCGC CAACGACATC GCCGAAGCCC TGTCGATCAA GCGTCAAGAG
CGCGAGGGGT TCTTCCGGCG TGTCGCCGCG ATGGAGCGCG ACGGCCAGAT CCGCCTCGAC
AAGCGTGGCC ACTACCAGTT GACCCATCCG TCGAATTTCG TCGCCGGTCG CGTGCAGGGG
CATCGCGACG GCTACGGGTT CGTGATTCGC GACGACGGCC AGGACGACCT GTTCTTGCCG
AACGGCGAAA TGCAGAAAGT GATGCACAAC GACCGCGTGC TCGCGCGGAT CGTCGGCTAC
GATCGCCGCG GCCGGCCGGA AGGGCACGTC GTCGAAGTCA CCGAACGCGC GAACAAGCGC
GTAATCGGTC GCCTGCTGAA CGAGAACGGT GCGCTGATCG TCGCGCCGGA AGACAAGCGC
ATCGGCCACG ACATCCTGAT CACGCAGAAC GTGAAGAAGG CGAAGGTCGG GCAGGTCGTC
GTCGTCGAAC TGACCGATTT CCCGAGCCGT CATTCGCAGC CGCTCGGCCG TGTCGTCGAA
GTGCTCGGCG ATATCGACGA TCCGGGCATG GAAATCGAAA TCGCGGTGCG CAAGTACGGC
GTGCCGCATG AATTCAGCCA GCCGGCGCTC GACGAAGCCG CGGCGCTGCC CGACAAGGTG
CGCCCGGCCG ATCTGCGTTT CCGCGTCGAC CTGCGCGACG TGCCGCTCGT GACGATCGAC
GGCGAGGACG CCCGAGACTT CGACGATGCC GTCTACTGCG AGCCGGTCAA GGTCGGTCGC
GGCGACGGCT TCCGGTTGAT CGTCGCGATC GCCGACGTGT CGCACTACGT ACAGCCGGGT
AGCGGGCTCG ATGCCGACGC GCTGGAGCGC AGCACGTCGG TCTACTTCCC GCGTCGCGTG
ATTCCGATGC TGCCGGAGAA GCTGTCGAAC GGCCTCTGTT CGCTGAATCC GCAGGTCGAT
CGCTGCGTGC TCGCGTGCGA CATGGTGATC ACCGCGCGCG GCGAGATCAA GGCCTACCAG
TTCTACCCGG CCGTGATCCA TTCGGCGGCG CGCCTCACGT ACACCGAAGT CGCGGCCGTG
CTGTCGAACA CGAAGGGGCC GGAGGCCGCG CGCCGCGCCG ATCTGCTGCC GCACCTGCAG
GATCTGTACG GCGTCTACAA GTCGCTGTTC GCCGCCCGTC AAAAGCGCGG TGCGATCGAC
TTCGACACGA CCGAGACCTA CATCGTCTGC AACTCGCAGG GCAAGATCGA GCAGATCGTG
CCGCGTCAGC GCAACGACGC GCACAAGCTG ATCGAGGAAT GCATGCTGGC CGCGAACGTC
TGCGCGGCCG ATTTCCTGAA GCGCAACAAG CATCCGGGCC TGTACCGCGT GCACGCGGGG
CCGACGCCGG AGAAGCTCGA GAACCTGCGC GCGTTCCTGC GCGGCATGGG CCTGTCGCTC
GGCGGCGGCG ACAAGCCGCA TGCGAGCGAC TACGCGGCGC TGATGGCGCA GATCCGCGAC
CGGCCGGACG CGCAGATGCT GCAGCCGATG CTGCTGCGCT CGATGCAGCA GGCCGTCTAC
AGCCCGGACA ACATCGGTCA CTTCGGCCTC GCGTACGAGG CGTACGCGCA CTTCACGAGC
CCGATCCGCC GCTATCCGGA CCTGCTCACG CACCGTGCGA TCTACGCGAT CCTGTCGGGC
AAGAAGTACA CGCCGAAGGC GCCGGAAGGC TTCGAGCTGA ACACCGCGCT GTCGCCGCGC
GCCCGCGCGA TGCAGCAGGC CGACGACGAA GCGCGCAACC GCTCGCGCTC GAACACGGCG
ATCTGGGAAG AGCTCGGCTT GCACTGCTCG GCGAACGAGC GCCGTGCGGA CGAGGCGTCG
CGCGACGTCG AAGCGTGGCT CAAGTGCTAC TTCATGCGCG ACAAGCTCGG CGAGGAGTAT
GGCGGGATGG TGAACGGCGT GACGTCGTTC GGCATCTTCG TGCAGCTCGA CACGCTGTTC
ATCGAAGGGC TTGTGCACGT GACGGAACTC GGCTCGGACT ACTTCCAGTA CGACGAGATC
AAGAACGAGT TGCGCGGCGA ACGCACGGGC ATCCGCTATC GCCTGTCGGA TCGCGTGCGC
GTGCAGGTGA GCCGCGTCGA TCTCGATGCG CGCAAGATCG ATTTCCGCCT CGTGCGCGAT
ACGCCGGTGA AGGCGCCGCG TCCGTCGCCC GCGCCAGCTG CCGGCATCGA TCGCAATGGC
AGCGGCAATG GCCCGCGCGT GCGTGCGCTG CCGCCGGTGG AGGAAACCGT GCCGCGTCGC
AAGAAGGCCG CGAGCGCGCC GAGCGTCGCG GTGCAGGAAG CGCGCGCCGC GCGTGGCGCC
GCGAAGAAGA AGAGCGGCGG TGCCGGCGGT GGCGCACCCG CGAAGCCGAC TGCGAAGAAG
GCTCGCGCCC GCAAGAAGTA TTGA
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| Protein sequence | MSKYPYPIPS REEILGVLRT SDAPLAANDI AEALSIKRQE REGFFRRVAA MERDGQIRLD
KRGHYQLTHP SNFVAGRVQG HRDGYGFVIR DDGQDDLFLP NGEMQKVMHN DRVLARIVGY
DRRGRPEGHV VEVTERANKR VIGRLLNENG ALIVAPEDKR IGHDILITQN VKKAKVGQVV
VVELTDFPSR HSQPLGRVVE VLGDIDDPGM EIEIAVRKYG VPHEFSQPAL DEAAALPDKV
RPADLRFRVD LRDVPLVTID GEDARDFDDA VYCEPVKVGR GDGFRLIVAI ADVSHYVQPG
SGLDADALER STSVYFPRRV IPMLPEKLSN GLCSLNPQVD RCVLACDMVI TARGEIKAYQ
FYPAVIHSAA RLTYTEVAAV LSNTKGPEAA RRADLLPHLQ DLYGVYKSLF AARQKRGAID
FDTTETYIVC NSQGKIEQIV PRQRNDAHKL IEECMLAANV CAADFLKRNK HPGLYRVHAG
PTPEKLENLR AFLRGMGLSL GGGDKPHASD YAALMAQIRD RPDAQMLQPM LLRSMQQAVY
SPDNIGHFGL AYEAYAHFTS PIRRYPDLLT HRAIYAILSG KKYTPKAPEG FELNTALSPR
ARAMQQADDE ARNRSRSNTA IWEELGLHCS ANERRADEAS RDVEAWLKCY FMRDKLGEEY
GGMVNGVTSF GIFVQLDTLF IEGLVHVTEL GSDYFQYDEI KNELRGERTG IRYRLSDRVR
VQVSRVDLDA RKIDFRLVRD TPVKAPRPSP APAAGIDRNG SGNGPRVRAL PPVEETVPRR
KKAASAPSVA VQEARAARGA AKKKSGGAGG GAPAKPTAKK ARARKKY
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