| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_1523 |
|---|
| Symbol | |
|---|
| ID | 4448801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | + |
|---|
| Start bp | 1684597 |
|---|
| End bp | 1685949 |
|---|
| Gene Length | 1353 bp |
|---|
| Protein Length | 450 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639693563 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_835168 |
|---|
| Protein GI | 116689545 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.68059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACACG ACATTCAATT TGCCGACGGC GCAGCGCCGT TCTCGCAAAC GCAACAGTTC
CACGACATCA AGAATGCCGC GCACGAGCAT CTGCTCACGC GGATCGAGGA ACTGGGTGCC
GAATTCGGCC GTTGGTCGCG ACAGGCGATC AACCAGTTCG TCGATCTCGA AATCGACAGC
TTCGTGCGGT TGCGGCGCAT CCCGCTCAAC GAGAGCGAGG TGCGTGCGGT GGCCGAGGCG
CTGACGAAGG AGCTCGCCGG CTTCGGGCCG ATCGAAGACC TGTTGGCGGA CCCGCACGTC
GAGGACATCC TGATCAACGG CTACAACGAC ATCTACGTGT CGCGCCACGG GATCCTGTCG
AAGCTGCCGA TCCGCTTCAC CGACAACGCG CATCTGCTGC GGATCGTGCG ACGGATTCTC
GCGCCGGTCG GCCGGCGGCT TGACGAATCG AATCCGATGG TCGATGCACG GCTGCCCGAC
GGCGGGCGGG TCAACGTCGT GATCGAACCG TTGTCGATCG ACGGCCCGGT CGTGTCGATC
CGGAAGTTCC GCAAGGACCC GCTGAAGCCC GAGGACCTGC TGGGCAACGG TACCTACAAC
GAGGAAATCG GCCGGTTGCT CGAGGCCGCG GTCGACGCGC GTTGCAACGT GCTCGTGTCG
GGCGGCACCA GTTCGGGCAA GACGTCGCTG CTGAACGCGC TGGCGTTCCA CATCCCGATG
GCGGAACGCG TCGTGACGAT CGAGGATACG GCCGAACTGT CGCTGAATCA CCCGCACGTC
GTGCGGCTCG AAAGTCGTCC CGGCGGGTTC GACGGTAGTG GCGTCGTGAC GATTCGCGAC
CTGCTGCGAA ACACGCTGCG GATGCGGCCG GACCGGATCA TCGTCGGCGA AGTGCGCGGC
GGTGAGGTGC TCGAAATGCT GCAGGCGATG AATACCGGCC ACGATGGATC GATGGGCACA
GTGCACGCCA GCTCGCCGCG CGAATGTTTG TACCGGCTCG AGATGCTGGC GGGTTTCGCC
GGTTTTCAGG GGACCGAAGC AAGCCTGCGA CGGCAGATCG CCAACGCGAT CGACTTCATC
GTGCAGATCG GCCGGCTGTC CAACGGCCGC CGCCGCATCC TGTCGATCAC CGAAGTCACC
GGCATGTCGG ACAACATCGT ATCGACGCAG GAGCTGTATC GCTACGAAGC GCGCGTCACG
CCGGAGGGCG AAGAGATCGA TCATTGGGAA TCGCTCGGCA TTCATCCGCA TTCGCCGAAG
CTGGCGCGTT TCCGCAGCAC GCTGGTGTCG GCGGGCGGCG GTGGCGGCGG GTTCGGTGGC
AGCTTCGGGC GAGGCGGGGG CTTCAATGTC TAG
|
|---|
| Protein sequence | MAHDIQFADG AAPFSQTQQF HDIKNAAHEH LLTRIEELGA EFGRWSRQAI NQFVDLEIDS
FVRLRRIPLN ESEVRAVAEA LTKELAGFGP IEDLLADPHV EDILINGYND IYVSRHGILS
KLPIRFTDNA HLLRIVRRIL APVGRRLDES NPMVDARLPD GGRVNVVIEP LSIDGPVVSI
RKFRKDPLKP EDLLGNGTYN EEIGRLLEAA VDARCNVLVS GGTSSGKTSL LNALAFHIPM
AERVVTIEDT AELSLNHPHV VRLESRPGGF DGSGVVTIRD LLRNTLRMRP DRIIVGEVRG
GEVLEMLQAM NTGHDGSMGT VHASSPRECL YRLEMLAGFA GFQGTEASLR RQIANAIDFI
VQIGRLSNGR RRILSITEVT GMSDNIVSTQ ELYRYEARVT PEGEEIDHWE SLGIHPHSPK
LARFRSTLVS AGGGGGGFGG SFGRGGGFNV
|
|---|
| |