Gene Bcen2424_0887 details

Gene Information

• Locus tag: Bcen2424_0887
• ID: 4449636
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia cenocepacia HI2424
• Kingdom: Bacteria
• Replicon accession: NC_008542
• Strand: +
• Start bp: 995137
• End bp: 997020
• Gene Length: 1884 bp
• Protein Length: 627 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 639692911
• Product: polysaccharide biosynthesis protein CapD
• Protein accession: YP_834533
• Protein GI: 116688910
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTGCGAT CCAGAGCATC TTGGCTGTCC CTGAGTGCTT TCCTGTTCGA CCTGACGGCG 
GTTGTCGCCG CATGGTTGTT CGCTTATCTC GTTCGTTTCA ACGGCAGCGT TCCGCATGAT 
TTCCTGAGCG GCGCGCTGAT GGCGCTGACG TGGGCACTGC CCGTCTATGC GCTGATGTTC 
CGCGGCTTCG GCCTGTATCG CGGGCTGTGG GTGTTCGCCA GCCTGCCCGA TCTGATGCGC 
ATCGCGAAGG CGGTGGCCGG CGGCGGCGTG ATCGTGATGA TCGGTGCCGT GATGTTCCAG 
CCGCAGCCGA TCATTCCGCG CTCGGTGCTG CTGGTGTCGC CGTTGATGCT GTTCCTGGCA 
ATGGGTGGCG CGCGTGCGCT GTATCGCGCG ACGAAGGAGT ACTACCTGTA CGGTGGGCTG 
GTAGGCAAGG GCAAGCCGGT GCTGGTGCTG GGTGCCGGCA CGGCCGGCGC GAGCCTCGCG 
CGCGAACTGT CGCGCTCCGG TGAATGGCGC TTGGTCGGCC TGCTCGACGA CGACGTCACG 
AAACAGGGGC GCGAAATCTA CGGCTACAAG GTGCTGGGCT CGTTCAACGA CCTCAAGCAC 
TGGACCGATG CGATGAAGGT CGAATACGCG ATCATCGCGA TTCCGTCGGC GTCGGTCGAA 
ACACAGCGTC GCGTCGCGAC CCTGTGCGTG CGGGCCGGCG TGAAGGCGAT GGTGCTGCCG 
TCGCTGACCG CGCTGATGCC GGGGCAGGGC TTCCTGTCGC AGGTACGGAA CATCGATCTC 
GAGGATCTGC TCGGCCGCGA CGCGGTGACG ATCGATACGC CGCACGTCGA GGCGCTGCTG 
CGCGGCCGCG TCGTGATGGT GACCGGCGCG GGCGGCTCGA TCGGCTCCGA GCTGTGCCGG 
CAGATCCTGC GCTTCGCCCC TGCGCAGCTC GTTGCATTCG ATCTCTCCGA ATACGCGATG 
TACCGGCTGA CCGAGGAATT GCGTGAGCGT TTTCCGGATC TGCCCGTGGT GCCGATCATC 
GGCGATGCGA AGGATTCGCT GCTGCTCGAC CAGGTGATGT CGCGTCACGC GCCGCACATC 
GTGTTCCATG CGGCCGCCTA CAAGCACGTG CCGTTGATGG AAGAGCACAA CGCATGGCAG 
GCGCTGCGCA ACAACGTGCT CGGCACCTAT CGCGTGGCGC GGGCGGCGAT CCGCCACGAC 
GTGCGTCACT TCGTGTTGAT CTCGACCGAC AAGGCGGTCA ATCCGACCAA CGTGATGGGC 
GCGAGCAAGC GTCTCGCGGA AATGGCCTGC CAGGCGTTGC AGCAGTCGAG CGGGCGTACG 
CAGTTCGAGA CGGTGCGCTT CGGCAACGTG CTCGGCAGCG CGGGCAGCGT GATTCCGAAG 
TTTCAGCAGC AGATCGCGAA GGGCGGTCCG GTGACGGTCA CGCACCCGGA GATCACGCGT 
TTCTTCATGA CGATCCCGGA AGCGTCGCAG CTCGTGCTGC AGGCGTCGAG CATGGGGCAT 
GGCGGCGAGA TCTTCATTCT CGATATGGGC GAGCCGGTGA AGATCGTCGA TCTCGCGTGC 
GACCTGATCC GCCTGTACGG TTTCTCGGAA GAACAGATTC GCATCGAGTT CACCGGGCTG 
CGGCCGGGCG AGAAGCTCTA CGAGGAGTTG CTCGCGGATG ACGAGGCGAC GACGCGCACG 
CCGCACCCGA AGCTGCGGAT CGCACGTGCG CGCGAAGTGC CGGACAATTT CCTCGACGAA 
TTGCTGCCGT GGCTGATGCA GCATCGCGTG CTGTCCGACG ACGAGGTACG GCGCGATCTG 
CGGCGCTGGG TGCCGGAATA CCAGACGGCC GTTGCCCCTA TGTTGCAGAG CGTGCCGTCG 
GTGCGCGTCG TATCGAACGG GTGA 

 

Protein sequence

MLRSRASWLS LSAFLFDLTA VVAAWLFAYL VRFNGSVPHD FLSGALMALT WALPVYALMF 
RGFGLYRGLW VFASLPDLMR IAKAVAGGGV IVMIGAVMFQ PQPIIPRSVL LVSPLMLFLA 
MGGARALYRA TKEYYLYGGL VGKGKPVLVL GAGTAGASLA RELSRSGEWR LVGLLDDDVT 
KQGREIYGYK VLGSFNDLKH WTDAMKVEYA IIAIPSASVE TQRRVATLCV RAGVKAMVLP 
SLTALMPGQG FLSQVRNIDL EDLLGRDAVT IDTPHVEALL RGRVVMVTGA GGSIGSELCR 
QILRFAPAQL VAFDLSEYAM YRLTEELRER FPDLPVVPII GDAKDSLLLD QVMSRHAPHI 
VFHAAAYKHV PLMEEHNAWQ ALRNNVLGTY RVARAAIRHD VRHFVLISTD KAVNPTNVMG 
ASKRLAEMAC QALQQSSGRT QFETVRFGNV LGSAGSVIPK FQQQIAKGGP VTVTHPEITR 
FFMTIPEASQ LVLQASSMGH GGEIFILDMG EPVKIVDLAC DLIRLYGFSE EQIRIEFTGL 
RPGEKLYEEL LADDEATTRT PHPKLRIARA REVPDNFLDE LLPWLMQHRV LSDDEVRRDL 
RRWVPEYQTA VAPMLQSVPS VRVVSNG