| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_0089 |
|---|
| Symbol | |
|---|
| ID | 4449552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia HI2424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008542 |
|---|
| Strand | + |
|---|
| Start bp | 90949 |
|---|
| End bp | 92106 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639692096 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_833736 |
|---|
| Protein GI | 116688113 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.332723 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGA ATCGATGGAT GGAGGCCCTG CTTGCCGCGG GTCTCGTTTG TGCGGCGGCC
ACGGCGTCGG CGCAGGTGAA GATCGGCGTG ACGCTGTCGG CTACCGGCCC GGCCGCGTCG
CTCGGGATTC CGGAAAAGAA CACGATCGCG CTGCTGCCGA AGGAAATCGC GGGCAAGAGC
GTGCAGTACA TCGTGCTGGA CGACGCGTCC GACACGAGCC GCGCGGTGCA GAACGTGCGC
AAGCTGATCG ACGAGGACCA CGTCGACGCG ATCATCGGCT CGTCCGTCAC GCCGAATTCG
CTCGCGATGC TCGATCCCGT GTCGCAGGGC AAGACGCCGG CGATCTCGCT CGCGGCGAGC
GCGCAGATCA TCGCGCCGAT GGACGCGAAG CGCGCATGGA TGTTCAAGGT GCCGCAGAAC
GACCAGCTGA TGGCCGACGC GATCGCCGGC TACATGGCCA AGCACGGCGT GAAGACGGTC
GGCTTCATCG GCTTCGCCGA TGCGTACGGC GACAGCTGGT ACAAGACGTT CGACGCGGCG
GCCGCGAAGA ACGGGCTGAA GCTCGTGTCG AACGAGCGCT ACAACCGGAC CGACGCGTCG
GTGATGGGGC AGGTGCTGAA GCTGCTGGGC GCGAACCCGG ATGCGGTGCT GATCGCCGGC
TCCGGCACGC CGGCGGCGCT GCCGGCCAAG ACGCTGAAGG AGCGCGGCTA CAAGGGCAAG
GTGTACCAGA CGCACGGCGT CGCGAACAAC GATTTCCTGC GCGTGTGCGG CAAGGATTGC
GAAGGCGAGA TCCTGCCGGC CGGCCCCGTG CTCGTGACCG ACCAGCTGCC CGACTCGAAT
CCGGTGAAGA AGCCGGCGCT CGGCTACAAG GCCGCGTACG AGAAGGCCTA CGGCGCGGGT
TCGCTGTCGA CGTTCGGCGG CCATGCGTGG GATGCGGGCC TGCTGCTGCA GCGGGCGATC
CCGGAAGCGC TGAAGAAGGG CCAGCCGGGC ACCGAGGCGT TCCGCGAAGC GCTGCGCGCG
TCGCTCGAAA GCGTGAAGGA TCTGCCGGTC TCGCATGGCG TGATCAACAT GACGGCGACC
GATCACAACG GCTTCGACAC GCGTGCGCGC GTGATGGTGC AGATCGTCGA CGGCAAGTGG
AAGCTGCAGG CCGAGTAA
|
|---|
| Protein sequence | MKMNRWMEAL LAAGLVCAAA TASAQVKIGV TLSATGPAAS LGIPEKNTIA LLPKEIAGKS
VQYIVLDDAS DTSRAVQNVR KLIDEDHVDA IIGSSVTPNS LAMLDPVSQG KTPAISLAAS
AQIIAPMDAK RAWMFKVPQN DQLMADAIAG YMAKHGVKTV GFIGFADAYG DSWYKTFDAA
AAKNGLKLVS NERYNRTDAS VMGQVLKLLG ANPDAVLIAG SGTPAALPAK TLKERGYKGK
VYQTHGVANN DFLRVCGKDC EGEILPAGPV LVTDQLPDSN PVKKPALGYK AAYEKAYGAG
SLSTFGGHAW DAGLLLQRAI PEALKKGQPG TEAFREALRA SLESVKDLPV SHGVINMTAT
DHNGFDTRAR VMVQIVDGKW KLQAE
|
|---|
| |