| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen2424_0062 |
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| Symbol | |
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| ID | 4448769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia cenocepacia HI2424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008542 |
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| Strand | - |
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| Start bp | 61780 |
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| End bp | 64104 |
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| Gene Length | 2325 bp |
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| Protein Length | 774 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639692069 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_833709 |
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| Protein GI | 116688086 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.348368 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGAA ATCGCTTCGT TATGCGGCGT ATCGCCACGA CCCTGCTCGT GGCAGGCATC
ATCGTCTCGC AGGCCGCCTA CGCTCAGGTC ACGCTCAATT TCGTGAATGC GGATATCGAC
CAGGTCGCGA AAGCGATCGG CGCCGCGACC GGCAAGACCA TCATCGTCGA CCCCCGCGTG
AAGGGGCAGC TCAATCTCGT GGCCGAACGG CCGGTGCCGG AAGACCAGGC ATTGAAGACG
CTGCAGTCGG CGCTGCGCAT GCAGGGCTTC GCGCTCGTGC AGGATCACGG CGTGCTGAAG
GTCGTGCCGG AAGCCGACGC GAAGCTGCAG GGCGTGCCGA CCTACATCGG CAATGCGCCG
CAGGCGCGCG GCGACCAGGT GATCACGCAG GTGTTCGAGC TGCACAACGA ATCGGCGAAC
AACCTGCTGC CGGTGCTGCG GCCGCTGATC TCGCCGAACA ACACGGTGAC GGCCTACCCG
GCGAACAACA CGATCGTCGT GACCGACTAT GCGGACAACG TGCGCCGCAT CGCGCAGATC
ATCGCGGGCG TCGACAGCGC CGCGGGCGCG CAGGTGCAGG TCGTGCCGCT GCGCAACGCG
AACGCGATCG ACCTCGCCGC GCAACTGCAG AAAATGCTCG ACCCGGGCGC GATCGGCAAC
AGCGACGCGA CGCTGAAGGT ATCGGTCACG GCCGACCCGC GCACCAACGC GCTGCTGCTG
CGTGCGTCGA ACGCGTCGCG CCTCGCGGCC GCGAAGCGTC TCGTGCAGCA GCTCGACGCG
CCGAGCGCGG TGCCCGGCAA CATGCATGTC GTGCCGCTGC GCAACGCCGA TGCGGTGAAG
CTCGCGAAGA CGCTGCGCGG GATGCTCGGC AAGGGCGGCA ACGACAGCGG CTCGTCGGCG
TCGTCCAACG ATGCGAACAG CTTCAACCAG AACGGCGGCT CGTCGTCGAG CGGCAACTTC
TCGACCGGCA CGTCGGGCAC CCCGCCGCTG CCGTCGGGCG GCCTGGGCAG TTCGTCGTCG
TCGTCCGGGT ATGGCGGCGG CTCGTCCGGC GGTGGCCTCG GTACCGGCGG CCTGCTCGGC
GGTGACAAGG ACAAGAGCGG CGACGACAAC CAGCCGGGCG GGATGATCCA GGCCGACTCG
GCCACCAACT CGCTGATCAT CACCGCGTCC GATCCGGTGT ACCGGAACCT GCGCTCGGTG
ATCGACCAGC TCGACGCACG GCGTGCGCAG GTCTATATCG AAGCGCTGAT CGTCGAGCTC
AACTCGAATA CGTCCGGCAA CCTCGGCATC CAGTGGCAGG TGGCGAGCGG CCAGTTCCTC
GGCGGTACGA ACCTGAATCC CACGGGCGGT TTGGGCAACA GCATCATCAA CCTGACGACG
GGCGGCACGG CGGCCACCGC CGGGTTGGCC GCCAATCTCG CGAACCTGAA CCAGGGCCTC
AACATCGGCT GGTTGCACAA CATGTTCGGC GTGCAGGGGC TCGGCGCGCT GCTGCAGTAT
TTTGCGGGCG TGAGCGACGC GAACGTGCTG TCGACGCCGA ACCTGATCAC GCTCGACAAC
GAGGAAGCGA AGATCGTCGT CGGCCAGAAC GTGCCGATCG CGACCGGTTC GTATTCGAAC
CTGACGAGCG GCACGACGAG CAACGCGTTC AACACCTACG ACCGTCGCGA CGTCGGCCTG
ACGCTGCACG TGAAGCCGCA GATCACCGAC GGCGGGATCC TGAAGCTGCA GCTCTATACC
GAGGATTCGG CGGTCGTCGC CGGCACGACG AACGCGCAGA CCGGCCCGAC CTTCACGAAA
CGCTCGATCC AGTCGACGAT CCTGGCCGAC AACGGCGAGA TCATCGTGCT CGGCGGCTTG
ATGCAGGACA ACTACCAGGT GTCGAACAGC AAGGTGCCGC TGCTCGGCGA CATCCCGTGG
ATTGGCCAGT TGTTCCGCTC CGAAACGAAG CAGCGCGCGA AAACCAACCT GATGGTGTTC
CTGCGCCCGG TGATCATTTC CGATCGCAGC ACCGCGCAGG CAGTCACCGC GAACCGCTAC
GACTACATCC AGGGCGTGAC GGGCGCCTAC AAGTCGGACA ACAACGTGAT GCGCGACAAG
GACGACCCGG TCGTCCCGCC GATGCCGCTG GGTCCGAGCC AGGGCGGCAC GCCGGCCGGC
AATCTGTTCG ATCTCGACAA GATGCGTCGC CAGCAGTTGC AGCGCCAGGT GGTGCCCGTG
CCTGCCCAGC CATTGCCGGA AGCAACGCCC GCGCAGCCGC AAAGCGTGCC GCAGCAGGCG
GTGCCGCAAC AGCCGCTGAC CACCGCGCCG GGAGCCTCGC AGTGA
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| Protein sequence | MTRNRFVMRR IATTLLVAGI IVSQAAYAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV
KGQLNLVAER PVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYIGNAP
QARGDQVITQ VFELHNESAN NLLPVLRPLI SPNNTVTAYP ANNTIVVTDY ADNVRRIAQI
IAGVDSAAGA QVQVVPLRNA NAIDLAAQLQ KMLDPGAIGN SDATLKVSVT ADPRTNALLL
RASNASRLAA AKRLVQQLDA PSAVPGNMHV VPLRNADAVK LAKTLRGMLG KGGNDSGSSA
SSNDANSFNQ NGGSSSSGNF STGTSGTPPL PSGGLGSSSS SSGYGGGSSG GGLGTGGLLG
GDKDKSGDDN QPGGMIQADS ATNSLIITAS DPVYRNLRSV IDQLDARRAQ VYIEALIVEL
NSNTSGNLGI QWQVASGQFL GGTNLNPTGG LGNSIINLTT GGTAATAGLA ANLANLNQGL
NIGWLHNMFG VQGLGALLQY FAGVSDANVL STPNLITLDN EEAKIVVGQN VPIATGSYSN
LTSGTTSNAF NTYDRRDVGL TLHVKPQITD GGILKLQLYT EDSAVVAGTT NAQTGPTFTK
RSIQSTILAD NGEIIVLGGL MQDNYQVSNS KVPLLGDIPW IGQLFRSETK QRAKTNLMVF
LRPVIISDRS TAQAVTANRY DYIQGVTGAY KSDNNVMRDK DDPVVPPMPL GPSQGGTPAG
NLFDLDKMRR QQLQRQVVPV PAQPLPEATP AQPQSVPQQA VPQQPLTTAP GASQ
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