| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Arth_2299 |
|---|
| Symbol | secD |
|---|
| ID | 4445342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Arthrobacter sp. FB24 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008541 |
|---|
| Strand | - |
|---|
| Start bp | 2588606 |
|---|
| End bp | 2590363 |
|---|
| Gene Length | 1758 bp |
|---|
| Protein Length | 585 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639690108 |
|---|
| Product | preprotein translocase subunit SecD |
|---|
| Protein accession | YP_831779 |
|---|
| Protein GI | 116670846 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.844455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTA CTGGCCCCAA AAACTCAGCA CTCAGAGTGC TGGTCTGGCT CGGCGTTATC
CTCGCCGTCA TGACTGCCGT GCTCGCCGGC GGCTCCATTT CCGGCCAGGC CAGCTGGGCA
CCCAAGCTCG CACTTGACCT TGAAGGCGGA ACCCAGATGA TCCTGGCGCC CAAGGTCGAA
GGCGGTTCGG ACATCAATGA GGATCAGCTC AACCAGGCCG TTGCGATCAT TCGCCAGCGC
GTTGACGGCT CAGGCGTGGC GGAAGCTGAA ATCAGCACGC AGTCCGGCCG CAATGTGGTG
GTAAGCCTCC CGGGTACGCC TTCCAAAGAG ACCCGCGCCC TCATTCAGGC CTCGGCCGAC
ATGAACTTCC GGCCGGTTCT CCAGGCCGGT CCCGGCGCCG CAGTACCCGT GGAATCACAG
ACGCCGGAAG ACAAGCTGCC CAAGCCGACG GCTGCGCCGG CCAACAGCAG CGACGTCAAC
TGGGTTACGC CAGAGGTCTA CAAGAAGTTT GAGACCCTGG ACTGCGACAA CCCGTCACAG
GACAAGCAGG AGCGCTCGGA TCCTGCCAAG CCGCTGGTGA CCTGTGAGCC TGCGACGGCC
ACGTCCCCGG CCATCAAGTA CATTCTGGGT CCGGTGGAAG TAAAGGGCTC GAACATCAAG
TCCTCCTCCT TCCAGCTGCA GCAGGGTGCA CAGGGTGCTG TTACCAACGA ATGGGCAGTA
AACATCCAGT TCGATGAGGC CGGCACCGCC AAGTTCAAGG AAGTCACGGA ACGGCTGTAC
CAGTTCTTCG TGGCGGCCGG CGGCGAATCA GGCAACGATC CCAAGGCCCA GTTCGCAATC
GTCCTCGATG ACCAGGTCAT CTCCGCCCCG CGTTCACTTG CGGTGATCAC GGACGGCCGT
CCCCAGATCA CAGGCGGATT CACGGAGGAT ACCGCGAAGG CATTGTCCGA TCAGCTCCGG
TTCGGCGCGC TCCCCATCAG CTTCGAGATC CAGAGCGAAC AGCAGATTTC CGCGACACTG
GGCGGTGAGC AGCTCCGGAT GGGCCTGCTC GCAGGCGTGA TCGGCCTGCT CCTGGTAGTG
GTCTACTCGC TCTTCCAGTA CCGGGCCCTG GGATTTGTCA CCATTTTCTC CCTCGTGGTT
GCAGGTGCGC TGACCTACCT GGCCATTGCC ATCCTGGGGT GGACTGAAAA CTACAGGCTG
TCACTTGCCG GCGTCGCCGG CCTCATCGTG GCCATCGGCC AGACAGCCGA CTCCTTTATC
GTCTATTTCG AACGAATCCG CGATGAATTG CGCGAAGGCC GCGGGCTGGT CTCCGCCGTG
GAGAACGGCT GGAAGCGTGC CAAGCGCACC GTCCTGGCGT CGAAGGCAGT GAACCTGCTG
GCAGCCCTGG TCCTCTACTT CGTGGCCGTA GGCAACGTGC GCGGTTTTGC CTTCACCTTG
GGCCTGACGG CCATCGCCGA CCTCATCGTC GTGTTCATGT TCACCCACCC GACCCTGCAG
CTGCTGGCCC GCACCAAGTT CTTCGGCGAG GGCCATAAGT TCTCCGGCCT TGACCCGAAG
CGGCTCGGCG CCGTGCCTCT CTACCGTGGT GCCGGCAGGC TCCGCACGCC GGAGGACAAG
CCGGCCGTGG TGCGCGCCAA GAACACCGGA GCAGCCGCCG AAGCTGAGCG CAGGATGACC
ATCGCAGAAC GCCGCCTCGC GGAAAAGCAG GAGCAGCTTG CCGGTTCCTC CAAGAGCACG
ACCAAGGAGG GCAAGTAA
|
|---|
| Protein sequence | MARTGPKNSA LRVLVWLGVI LAVMTAVLAG GSISGQASWA PKLALDLEGG TQMILAPKVE
GGSDINEDQL NQAVAIIRQR VDGSGVAEAE ISTQSGRNVV VSLPGTPSKE TRALIQASAD
MNFRPVLQAG PGAAVPVESQ TPEDKLPKPT AAPANSSDVN WVTPEVYKKF ETLDCDNPSQ
DKQERSDPAK PLVTCEPATA TSPAIKYILG PVEVKGSNIK SSSFQLQQGA QGAVTNEWAV
NIQFDEAGTA KFKEVTERLY QFFVAAGGES GNDPKAQFAI VLDDQVISAP RSLAVITDGR
PQITGGFTED TAKALSDQLR FGALPISFEI QSEQQISATL GGEQLRMGLL AGVIGLLLVV
VYSLFQYRAL GFVTIFSLVV AGALTYLAIA ILGWTENYRL SLAGVAGLIV AIGQTADSFI
VYFERIRDEL REGRGLVSAV ENGWKRAKRT VLASKAVNLL AALVLYFVAV GNVRGFAFTL
GLTAIADLIV VFMFTHPTLQ LLARTKFFGE GHKFSGLDPK RLGAVPLYRG AGRLRTPEDK
PAVVRAKNTG AAAEAERRMT IAERRLAEKQ EQLAGSSKST TKEGK
|
|---|
| |