| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | STER_0309 |
|---|
| Symbol | |
|---|
| ID | 4437016 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptococcus thermophilus LMD-9 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008532 |
|---|
| Strand | + |
|---|
| Start bp | 265666 |
|---|
| End bp | 266433 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639676047 |
|---|
| Product | ribosomal large subunit pseudouridine synthase B |
|---|
| Protein accession | YP_819814 |
|---|
| Protein GI | 116627195 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTAGGTA GAAAGGATAC AGCTGAAGCT GTAGAAAAAA GAATGCGAAT TAATAAATAT
ATCGCCCACG CTGGTGTGGC TAGTCGTCGT AAAGCTGAGG AATTGATTAA AGAAGGCCGT
GTGACTTTAA ACGGTAAGAC CGTTATGGAA TTGGCAACAA TTGTCAAAAA TGGCGACATT
GTCGAGGTAA ATGGAAGCCC AATTTATAAT GAAGAAAAGG TATACTACCT TCTTAATAAA
CCACGTGGGG TTATTTCTTC AGTATCTGAT GAGAAAAATC GTAAGACGGT TATTGATCTA
ATGCCCCACG TTAAGGAACG TATCTATCCT GTTGGTCGTC TTGATTGGGA TACGACTGGC
CTTCTTATTT TAACAAATGA TGGTGACTTT ACCGATAAAA TGATTCACCC ACGTAATGAG
ATTGATAAGG TTTATTTGGC GCGTGTAAAA GGTATTGCGA CTAAGGAAAA TCTTCGTCCT
TTGACTCGTG GTGTGGTGAT TGATGGTAAA AAAACTCAGC CGGCCCATTA CAATATTATC
AAGGTGGATC ATGAAAAGAA CCGATCAGTC GTCGAGTTGA CGATTCATGA AGGGCGAAAC
CATCAGGTTA AGAAAATGTT TGAATCAGTA GGTTTGATTG TTGATAAGTT GTCACGTACC
CGTTTTGGTA CCCTAGATTT GACAGGACTA CGTCCAGGAG AGTCACGCCG TCTAAACAAA
AAAGAAATTA GTCAGCTTCA TAACATTGCT GTTAACAAGG TTAAATGA
|
|---|
| Protein sequence | MLGRKDTAEA VEKRMRINKY IAHAGVASRR KAEELIKEGR VTLNGKTVME LATIVKNGDI
VEVNGSPIYN EEKVYYLLNK PRGVISSVSD EKNRKTVIDL MPHVKERIYP VGRLDWDTTG
LLILTNDGDF TDKMIHPRNE IDKVYLARVK GIATKENLRP LTRGVVIDGK KTQPAHYNII
KVDHEKNRSV VELTIHEGRN HQVKKMFESV GLIVDKLSRT RFGTLDLTGL RPGESRRLNK
KEISQLHNIA VNKVK
|
|---|
| |