Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LEUM_0197 |
Symbol | rplD |
ID | 4422098 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 |
Kingdom | Bacteria |
Replicon accession | NC_008531 |
Strand | + |
Start bp | 173605 |
End bp | 174228 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 639673910 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_817701 |
Protein GI | 116617330 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00203095 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTAAAG TTGCTGTATT AAAGCAAGAT GGTAGTCAAG CTGCAGAAAT TGAATTAAAT GACGCAGTAT TCGCCATCGA ACCTAACAAC GCCGTTATTA CTGATGCAGT ATTGATGCAA CGCGCATCAT TGCGTCAAGG TACACATGCT GTTAAGAATC GTTCTGCGGT TTCTGGTGGT GGACGTAAGC CTTGGAAGCA AAAGGGTACT GGTCGTGCAC GTGCCGGTTC AATTCGTGAA CCTCAGTTCC GTGGTGGTGG AATTGTTTTC GGACCTTCAC CACGTTCATA TGCTTACCGT ATTAACCGTA AGGCATATCA ATTGGCATTA AAGTCAGTTT TGTCACAAAA AGTCGCTGAT AACAAGTTGG TAGTTGTTGA TGCTTTGTCA TTTGAAGCAC CAAAAACACA AGACTTTAAG AAAGTTTTGG CAAACTTGTC AGCTGATAAA AAGACATTAG TAGTTGTTGA TGAAGACAAC GAAAACGCAA TCTTGTCAGC ACGTAACTTG GCTAATGTTC AAGTTATGAC AACAAAGGGT ATCAACGTGC TTGATGTTGT TAATGCAGAT AAGCTGGTGA TTGTTCAATC ATCAATCGAA GAAATCCAAG GAGGTCTTGC CTAA
|
Protein sequence | MTKVAVLKQD GSQAAEIELN DAVFAIEPNN AVITDAVLMQ RASLRQGTHA VKNRSAVSGG GRKPWKQKGT GRARAGSIRE PQFRGGGIVF GPSPRSYAYR INRKAYQLAL KSVLSQKVAD NKLVVVDALS FEAPKTQDFK KVLANLSADK KTLVVVDEDN ENAILSARNL ANVQVMTTKG INVLDVVNAD KLVIVQSSIE EIQGGLA
|
| |