Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_1757 |
Symbol | |
ID | 4439022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | - |
Start bp | 1743517 |
End bp | 1744194 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 639673575 |
Product | peptide ABC transporter ATPase |
Protein accession | YP_815555 |
Protein GI | 116630311 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0000421952 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCAGTAA TTGAATTAAA AAATGTAAGT AAATCATATG GCCAAGGAAG TGCCAAAGTT GATGCCCTTA AAGATGTTGA CTTTGAAGCT CAAAAAGGAG AAGTTGTCTT AATTGAAGGA CCTTCTGGAG CTGGTAAAAG TACTTTCTTA ACTATTGCGG GAGCCCTTCA AAAACCCAGT GATGGTGAAG TTTTCATTGG TGGAAAAAAT GTTACTAATT ATTCACCTAA GCAAGCCGAT GCGTTAAGAT TGGATAAAAT TGGCTTTGTA CTTCAGGCTT ATAATTTAGT GCCATATTTG ACTGTTAAAG AGCAGTTCGT TTTAGTAGAT AAAGTTAAAA AGAGTGGCAA TATGAGCCAA GAAGGATTAG ATAATTTATT AAATGAATTA GGAATTATGC AGTTAATAAA TAAATATCCT AAAGAATTAT CTGGTGGCCA GCAGCAGAGA GTTGCAATCG CAAGAGCTTT ATATGCGGAT CCAGCAATTA TTTTGGCAGA TGAGCCAACT GCTTCCTTAG ATAGTGAAAA AGTTGAAGAG GTAGGTAAAC TATTTAAGTC TTTAGCTAAG CAAAAAGAAA AAGCAATTAT CTTAGTTACT CATGACTTAA GGCTTAATAA GTATTCTGAT AAAATCTATG AAATGTTAGA TGGACATTTG AGTTTGAAAA AAGGATAA
|
Protein sequence | MSVIELKNVS KSYGQGSAKV DALKDVDFEA QKGEVVLIEG PSGAGKSTFL TIAGALQKPS DGEVFIGGKN VTNYSPKQAD ALRLDKIGFV LQAYNLVPYL TVKEQFVLVD KVKKSGNMSQ EGLDNLLNEL GIMQLINKYP KELSGGQQQR VAIARALYAD PAIILADEPT ASLDSEKVEE VGKLFKSLAK QKEKAIILVT HDLRLNKYSD KIYEMLDGHL SLKKG
|
| |