Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | LGAS_1493 |
Symbol | |
ID | 4439318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Lactobacillus gasseri ATCC 33323 |
Kingdom | Bacteria |
Replicon accession | NC_008530 |
Strand | - |
Start bp | 1485212 |
End bp | 1486564 |
Gene Length | 1353 bp |
Protein Length | 450 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 639673321 |
Product | tRNA (uracil-5-)-methyltransferase related enzyme |
Protein accession | YP_815287 |
Protein GI | 116630115 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00115343 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 105 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAGA ATCAAATTGT CGATTTAGAA ATTACCGACC TATCTTATGA AGCAATGGGA GTTGCTCACT TAGACGGCAT GACTGTCTTT GTGAACAATG CTCTTCCAGG TGAGGTTGTT TCAGCTAAAA TTTTAAAGGT AAAGAAGAAT TTTGCCTTCG CTAAAATTGA GAAAATTAAG AAGGAAAGTC CAGATAGAAT TAACGTTGAA CGTCGTCAAT GGGTTCAAAC AGGCTTAGCT TCGCTTGCTC ATATTAAGTA TGATAAGCAA CTTGAGTTTA AACGCAATCA AGTGGTGAAC CTATTGCACA AGGCCGATTT AGATAATATT AAAGTTAGTC AGACTTTGCC TAGTCCAGAA GAAACCGGCT ATCGTAATAA GGCACAAGTG CCAGTTCGTG AGGTTCACGG CAAGCTTGAT ATAGGTTTCT TTAGAAAGCA TTCGCATGAT TTAGTGCCGT TAACTAATTT CTTTACTACT GATCCGGAGA TTGACCGAGT TTTAATTAAA GTTCGTGATA TTTTAAGAAA GAATCATGTT CCAGCTTATG ATGAGATTCA CAATAAGGGT GAAGTGCGTT ATCTTGATGT ACGTCGCTCA AAGGCAAGCG GCGAGATTAT GGTAATTTTG GTCTGCTTGC ACAAGGAGTT TCCACAGTTA AAGAAGGTAA CTAAGGAAAT TAGTGAGATC AAAGGTGTCA CTAGCGTCGT TTTGAACCAT AATCCTAAAA AGACTAACGT AATTTTGGGT AAAAAAGATT ATTTGCTTTG GGGAGAGCCT CAAATTACCG ATAAAATTGG GGATGTTAGT TTTAAGATTT CACCACAAAG TTTCTTCCAA ATTAATTCGC TGCAAACCCC GCGCTTGTAT GACTTGGCAA TTCAAAAAGC TGATCTTAAA CCCGATGACG TTGTAATTGA TGCCTATTCT GGAATTGGAA CAATTGGTTT GTCAGTTGCT AAGCATGTGA AGGCAGTGCG AGGGATGGAA GTTATCAAGC CAGCTGTTGA CGATGCTAAC GCAAATGCAA AATTAAATGG TATTAACAAC GCTGAATATG TTGTTGGTAA AGCAGAAGAA GTAATGCCGC GTTGGGCTAA AGAGGGGCTT AAGACTGATG TTATCTTCGT TGATCCACCA AGAAAGGGAT TAACGCCAGA ATTTATTGAT GCGGCTGTTG AAACTCATCC TAAGAAGATT GTTTATATTT CATGTAACCC AGCTACAATG GTTAGAGATC TGCAATTGTT CCGTGAGCAA GGTTATGACT TTAATGAGAT TGATCCTGTC GATATGTTCC CTCAAACTCC CCATGTGGAG TCTGTTACGG TCCTTGAACG TACAGGAAAA TAG
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Protein sequence | MQKNQIVDLE ITDLSYEAMG VAHLDGMTVF VNNALPGEVV SAKILKVKKN FAFAKIEKIK KESPDRINVE RRQWVQTGLA SLAHIKYDKQ LEFKRNQVVN LLHKADLDNI KVSQTLPSPE ETGYRNKAQV PVREVHGKLD IGFFRKHSHD LVPLTNFFTT DPEIDRVLIK VRDILRKNHV PAYDEIHNKG EVRYLDVRRS KASGEIMVIL VCLHKEFPQL KKVTKEISEI KGVTSVVLNH NPKKTNVILG KKDYLLWGEP QITDKIGDVS FKISPQSFFQ INSLQTPRLY DLAIQKADLK PDDVVIDAYS GIGTIGLSVA KHVKAVRGME VIKPAVDDAN ANAKLNGINN AEYVVGKAEE VMPRWAKEGL KTDVIFVDPP RKGLTPEFID AAVETHPKKI VYISCNPATM VRDLQLFREQ GYDFNEIDPV DMFPQTPHVE SVTVLERTGK
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