| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1423 |
|---|
| Symbol | |
|---|
| ID | 4439369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1416809 |
|---|
| End bp | 1418203 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 639673255 |
|---|
| Product | major facilitator superfamily permease |
|---|
| Protein accession | YP_815222 |
|---|
| Protein GI | 116630050 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.904673 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.0000661431 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGG AAAAAATTCC TAAGCACGTA CTTGCAGCAA TTTTTGCGAC AGGCATTCTC
TCATTTAGTG GGGTAATTAT TGAGACTTCA ATGAATATTG CCTTTCCAAC TTTAATGAAA
GAGTTTAATT TAGCTACTAA TACAGTTCAA TGGCTGACAT CAATTTATTT GTTAACTATT
TCGATTATTG TACCTTTATC AGCAAATTTG AAGGCTCACT TTAAAACAAA AAAGTTATTT
ATCACAGCGA ATTTATTATA TTTAAGTGGC TTAATTATTG GTGCATGTGC GCCTAATTTT
GAATTTTTAT TACTTGGTCG AATTGTTGAA GGGCTAGGGA CTGGGATCGC CCTTCCTTTA
ATGTTTAATA TCATTATGGA ACAGGTACCA AAAAGTCGAG TTGGAGTAAT GATGGGGATT
GGAAATATGA TTACTGGTAT TGCACCAGCT CTAGGGCCAA CGTTTGGTGG TCTTGTTGTA
ACTCACTTAG GTTGGCGCTG GATCTTTTAT ATTATGATTC CCTTTATCTT GATTTCATTG
GTACTTGGAA TTGGAGGAAT TAGACAAAAA TCGCAACTGA GAGAAGTTAA GTTTGATCTT
TTAAGTATGC TATTAATCGC AATCTTTTTT ATTGGAATGA TTTTGGGCTT TAGCAATTTG
AGCACTGGAA ATTATTTTGC CTTTAATTGT TTAGGAGCTA TTTTAATTGC CTTAGTTTCT
TTAGGGTTGT TAGTCTATCG TTCAAATAGA ATTAACGATC CAGTTTTAGA CTTAAATTTA
TTTAAAAACA AATTTTTTGC TGCTCACGCT ATAGGATTTT TCTTAATCCA AATTATTTCA
TTAGGCAATG CCTTTTTATT ACCAAACTAT ATTCAATTAG TTAATGGAGA TTCTGCTTTA
ATTGCTGGAT TAGTTGTTTT ACCAGCTGGT TTTGCTGGTG CATTTTTAGC TCCATTTGGT
GGAAGTTTGC TTGATCGATA TGGTGCAAGA AAACCGATTT TAATTGGGTC TAGTTTTATG
TTGCTAGAAC TGCTTATTTT TACCATTTTT ACAAGTAATT TAAGTAATCT TCTTATTCTA
TTTATTTATA TTTTCTATAT GGGTGGAATG GGAATGATGA TGGGATGCGT TATGACTGAT
GCGCTTGATC ATCTTGAAAA AAGTGAAGTA ACCCAAGGCA ATGCAATTTT GAATACTTTA
CAAGAATTTG CTGGTGCGGT TGGTACATCA ACAACTGCTG CTTTTGTGGC GTTTGCGCAA
AGAAAGGCTG GATCAAAAGG CGCAATTCCA ACTGCTCATG GTACTCATTT AGCTTATATT
TTCTTATTAG TTCTCGTGTT AATTATCATC GCTATTTTTA TGAAATATAC TCAAGTACGT
AATAAAAATG ATTAA
|
|---|
| Protein sequence | MTKEKIPKHV LAAIFATGIL SFSGVIIETS MNIAFPTLMK EFNLATNTVQ WLTSIYLLTI
SIIVPLSANL KAHFKTKKLF ITANLLYLSG LIIGACAPNF EFLLLGRIVE GLGTGIALPL
MFNIIMEQVP KSRVGVMMGI GNMITGIAPA LGPTFGGLVV THLGWRWIFY IMIPFILISL
VLGIGGIRQK SQLREVKFDL LSMLLIAIFF IGMILGFSNL STGNYFAFNC LGAILIALVS
LGLLVYRSNR INDPVLDLNL FKNKFFAAHA IGFFLIQIIS LGNAFLLPNY IQLVNGDSAL
IAGLVVLPAG FAGAFLAPFG GSLLDRYGAR KPILIGSSFM LLELLIFTIF TSNLSNLLIL
FIYIFYMGGM GMMMGCVMTD ALDHLEKSEV TQGNAILNTL QEFAGAVGTS TTAAFVAFAQ
RKAGSKGAIP TAHGTHLAYI FLLVLVLIII AIFMKYTQVR NKND
|
|---|
| |