| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1184 |
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| Symbol | |
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| ID | 4439612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Lactobacillus gasseri ATCC 33323 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008530 |
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| Strand | + |
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| Start bp | 1184359 |
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| End bp | 1186038 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 639673021 |
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| Product | mRNA degradation ribonuclease J1/J2enzyme |
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| Protein accession | YP_814991 |
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| Protein GI | 116629819 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0595] Predicted hydrolase of the metallo-beta-lactamase superfamily |
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| TIGRFAM ID | [TIGR00649] conserved hypothetical protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.238589 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.189095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAATTAA AGAATAACGA AGTCGGCGTT TTCGCTATAG GGGGTCTAGG CGAAATCGGC
CGTAATATGT ACTGCGTTGA GTACCAAGAT GAGATTATCA TCATGGACTG CGGTATTAAA
TTCCCAGAAG ATGACATGAT GGGAATTAAT TATGTTATCT CAGACTATTC TTACCTTGTT
AAGAATAGAA AAAAAATCAA AGCATTGGTT GTCACTCACG GACACGAAGA CCACATTGGT
GGGATTCCTT ACCTTTTAAA GAAAATTCCT GAAATTCCAG TTTATGCAAC TCCATTTGCT
CTCGCTCTAA TTCGCGGAAA ACTTGATGAA CATGGAATTT TAAATTCTAG TGAGCTTCAC
GAAGAGCATG AAGATACTGT TTTGAAGTTT GATAAGCTTT CAGTTAGTTT TTTCAGAACA
ACTCACTCAA TCCCTGACAC TTTGGGAATT GCAGTTCATA CTCCAGAAGG TGCAGTTGTC
TTTACGGGAG ATTTTAAGTT TGACTTAACT CCTGTAATGA GTCAACCTGC CCCTGACTTT
CAGAAGATGG CCAAGTTAGG TCAAGAAGGT GTACTCGCCC TCCTGTCTGA CTCAACTAAT
GCGGAAGTTC CAACCTTTAC AAAATCAGAA AGATTCGTTG CTCATTCCTT ACACGATATC
ATCACTGGAA TTAAAGGTAG AATTATTTTT GCAACCTTTG CTTCTAACCT TTATCGTGTG
TCAACCGCTA TTAAAGCAGC TGTTGACACC GGAAGAAAAG TTGCAATCTT TGGTCGCTCA
ATGGAAAATG GTGTTCAAAA TGGTATTGAT CTTGGCTATC TAAATATCCC AGAAGGAACT
TTAGTCGATG CCAACGAAAT CAACCATACT CCACCTGAAA AAGCAATGAT TTTATGTACT
GGTTCTCAAG GAGAACCACT TGCAGCTCTT TCAAGAATTG CAGATGGAAC TCACCGTCAA
ATTTCATTAC AACCAGGCGA TACAGTAATC TTTTCATCTA ACCCTATTCC GGGCAATACA
ACCAGTGTTA ACCACTTAAT TAATAAGTTA ACTGAAGCTG GTGCTAATGT TGTTCATGGC
AAGATTCATA ATGTCCACAC TTCTGGACAC GCTGGTCAAG AAGAACAAAA GATGATGATT
GAGTTAACCA AGCCTGAATA CTTCATTCCT GTTCACGGTG AATACAGAAT GCAAGTTGTT
CATACTGAAA CTGCTCAGTC TACTGGCATG GCTAAAGATC ATACCTTTGT TTTAAAAAAT
GGCGATGTAC TTGCTTTAAC TAAAGATTCT TCAAGAATCG CTGGTCACAT TAATATCCCA
GATGTCTTTG TTGATACTTC TGGTAGTGAT GATGTTGGAA ATATCGTCGT TCGTGACCGC
CAAATTTTAG CTGAAGAAGG TCTTGTGGTA GTTGTAGCAA CTGTTGACTA CAAGCACCAA
CGTGTCTTAG CAGGACCAGA TATTTTAAGT CGTGGTTTTG TTTACATGCG TGAATCAACT
GAGTTGATTA GTCAAGCACA GAAACATGTC TACCACATTC TTAAGACTGA AATGGCTAAA
GATCCACAAC CAAAAGAAAA TGAAATTAGA AAGGCAATTA TTGAAAATCT TCAAGATTTC
TTATATTCAA AGACTGAAAG AAGACCGATG ATTTTGCCAA TGCTAATTGA AAAGAAATAA
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| Protein sequence | MKLKNNEVGV FAIGGLGEIG RNMYCVEYQD EIIIMDCGIK FPEDDMMGIN YVISDYSYLV
KNRKKIKALV VTHGHEDHIG GIPYLLKKIP EIPVYATPFA LALIRGKLDE HGILNSSELH
EEHEDTVLKF DKLSVSFFRT THSIPDTLGI AVHTPEGAVV FTGDFKFDLT PVMSQPAPDF
QKMAKLGQEG VLALLSDSTN AEVPTFTKSE RFVAHSLHDI ITGIKGRIIF ATFASNLYRV
STAIKAAVDT GRKVAIFGRS MENGVQNGID LGYLNIPEGT LVDANEINHT PPEKAMILCT
GSQGEPLAAL SRIADGTHRQ ISLQPGDTVI FSSNPIPGNT TSVNHLINKL TEAGANVVHG
KIHNVHTSGH AGQEEQKMMI ELTKPEYFIP VHGEYRMQVV HTETAQSTGM AKDHTFVLKN
GDVLALTKDS SRIAGHINIP DVFVDTSGSD DVGNIVVRDR QILAEEGLVV VVATVDYKHQ
RVLAGPDILS RGFVYMREST ELISQAQKHV YHILKTEMAK DPQPKENEIR KAIIENLQDF
LYSKTERRPM ILPMLIEKK
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