| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | LGAS_1031 |
|---|
| Symbol | |
|---|
| ID | 4439739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Lactobacillus gasseri ATCC 33323 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008530 |
|---|
| Strand | - |
|---|
| Start bp | 1034711 |
|---|
| End bp | 1038325 |
|---|
| Gene Length | 3615 bp |
|---|
| Protein Length | 1204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 639672874 |
|---|
| Product | ATP-dependent exoDNAse (exonuclease V) beta subunit |
|---|
| Protein accession | YP_814844 |
|---|
| Protein GI | 116629672 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | [TIGR02785] recombination helicase AddA, Firmicutes type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.655323 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAAATT TTACTAAAGA ACAAGATCAG GCAATTAATG ATGCCGGAAA AGATATCTTA
GTTTCTGCAT CTGCTGGTTC AGGTAAGACT ACCGTTTTAG TTGAGCGAGT TTTAAAAAAG
ATTCTGTCGG GTACACCAGT CTCATCTTTA CTGATTATTA CTTTCACTAA GGCCGCAGCA
CGTGAAATGA AAGAACGAAT CAAACAAAAG ATAAGCGATC AACTTGAAAT TGAACCTGAT
AATCAATTTT TACGTAGTCA ATTATTAGAT GTCGATACAG CTAATATTTC TACGATTGAC
TCTTTTTGTT TAGATGTAAT TAGACGTTTT TACTATGTAA TTGACCTTGA TCCGCAATTT
AGTGTTTTAA CTGATGAAAC TCAGGCAGAA CTTTTGAAAG AGCGCGCCTT GCGTGAGATA
GAGGCAGATT ATCTTGAAGG AGATAATCAA GACTTTCAAG ATTTTTATGA TAATTTCTCA
GGGGATCGGG ATGCAGAAGG CGCTCGCAAC TTGCTCTTGC AACTGTATAA TACAGCAACG
ACCGAACCAA ACTATGAGAA GTTTCTCGAT AATCTGCCGA CTTGCTATGA AGTAGGCGAT
AATTTAATTC GATCTAATTT GTGGCAGCAG CAAATAAAGC CTCTTTTACT TAAAGAAATA
TCCGATTTAA AAGCAGAAGT AGAAGCTCTG CTTGCTGAAC CAGAAATAAA TAGTTCTGAT
TTAGTTAAAG TTAAAGAGAA TTATGACATT TTTTCTAATC GTTTAGATAG CTTTTGGGAA
TCTTTAAATA CTGACCAACC GTACAACGAA ATTCGTGCTA ATTTAATGAA TTGTAAATTT
GAAAAAGCAG TCCGAAAGTC TAAAAAATGG TCAGATGAAA GCATTGAAGT ATATCAAGAT
AGTCAAGATT TAAAATTAGA CTTGAACGAT CAACTTAAAA AGATTTTTGC TAGCTTTTTT
GTGGTTGAAG AAAAAGAGCA AATAGCAGTT TTGCAAAAGT CAGAAAAGAT AGTTAAAACA
ATTGTTGCAG CTGAGAAAAA ATTGATTCAA AAATTCAGTC AATTAAAACG TGAGCAAAAT
TTGATTGACT ATAGCGATAT GGAGCAATTT GCTTTTAGTA TTTTGACGAC AGATACTTCA
AATGCACATA TTGCACAAGA ATATTATCAA GAAAAATTTA ACGAGATCTT GATTGATGAA
TATCAAGATG TGAACGCACT TCAAGAAAAT ATCATTAAAG CCATTAAAAA GAAGGGGCAG
AACACGCTTT TTATGGTTGG GGATGTCAAG CAGTCAATTT ATGGCTTTAG GCAAGCACGG
CCAGACCTCT TTTTGAGTAA GTATCATACT TATGGTAAAG ATAATGATAG TGAAAAAATC
ATCCTAGCTG ATAATTTTAG ATCAACCAAA AGGGTCACCA AAACAGTTAA TGACTTATTT
AATCCAATTT TGACAACTAA TTTTGGTGGT ATTGATTATA AAAAAGAAGG CCAATTACAG
TTCGGAGCTA GCTATTATCC ATCAGATTTG CCGACAGCAA GTGAATATAT TTTTACCGAT
AAAAAACAAA CCCAGTCGGC TTATGAAGAT CAATATGGCG ATGAAATGGA TTTTAGCGAA
GTTCAGATGG TAATTGCGAG AATTAAGCAA TTAAAAGCAG AAAATTTTCA AGTTTGGGAT
CGCAGAACGC AGCTTAAAAG GCCACTTGAG TATTCAGATA TTGCAATTAT TACAAGAACT
AGAAGTGATA ACTTGCAGGT AATGCAAGAA TTTGCCAAAG CTGATTTACC TTTATTTGTT
ACTGATGCGC AAAATTATTT TCAAACTTTT GAGTTGATTA TGATTATGAA TTACTTAAGG
TTGATTGATA ACCCTCAGCA AGATATTCCT CTAGTAGCTG TAATGAGATC ACCCCTATTT
AACTTCAAAG AACCAGAACT TGCACAAATT CGCGTTAAAA CTCCAGCTGG CAATTTTTAT
ACTGCGCTTA CTAGCTTTGC ATCAGTTAAT TCGTCTCTAG GAAAGAAATG TAAAGAATTT
TTACAGCAGC TTGAAACTCT TCGCTCATTT GCTGCTACGC ACCGAATTTC TGAGTTGATC
TGGAGTATTT ACGAAAAAAC ACATCTTTTA GAAATTGTCA CTGGTTTACC AAATGGGCAA
CAACGTAGAG TTAATCTTGA ATCTTTGTAT GAACGGGCAA CTTCGTATGA AAGTGCAGGT
TTTAAAGGCT TGTATCAATT CATTAGTTTT ATTGAGCGAA TGAGAAAGAA TCAAAAAGAT
TTAGCTCAAC CTCTCTTAAG CGATAAAGCA GATAATGCAG TGAAATTAAT GACTATTCAT
GCTTCTAAGG GACTAGAGTT TCCCATAGTA TTTGTAATGG GATTAGGACA TCAGTATCAG
ACTAGAGACT TAAGTGGAAA TTTCACAATT AGTCAGAATG AATTAGGTTT AACGATAAAA
GAAAAAAATT ATCGTATTGA TTCTTTAGTT AAATCATTAG CTGATGTTCA AAAAAGACAA
CAAATGCTTG AAGAAGAAGC AAGAATTTTA TATGTTGGCT TAACTAGAGC ACAGCAGAAA
TTGATCTTAG TGGCAAGCGT GAACGAAATT GAAAACAAAC GAAAAAAATG GGTGAGTGAG
CTTGATCAAA AGAAAGATAT AATTCCATTA GTTAAAAAGA TTAATGCTCA ATCACCGCTT
GATTTTTTAG GACCAAAGCT AGAGCAAAAA CATGAATTTG ATCAAACTAT TCGAGATATG
ACCTCTGCTT TAGAAGAACA AGATAAGCTC TATTATTTAA AATTCAATCT TGACTTGGAG
CCTGAGAAAA TTAAAGATCA AAATGAGGAT AGCCAAGAAG TAAATTCTAA CGTAAACAAG
GTAGTTAAAG AATTGTACAA CTTTAAGTAT CCATTTGAAG ATGCTACTAA GACTACAGCT
TATCAGTCTG TATCTGAAAT TAAAAAAGCC TTTAATGATC CAATAGATAC AGAGCTTGAA
AACTCTCGTC TTATATCTTC AAGTAATCGT TATTTACAAC CAATTGATGA AACACCAACC
TTTTTAGAGG GACAAAAATT TACTGGTGCT GAAATAGGGA CGGCAATGCA CTTAGTTTTG
CAATATTATA ATTATGAAGG TAATAAAGAC CAAGAAAATT TAGATCAAGA AATCGATCAG
CTCGTTGAAT TAGGAAAACT GAATTCTTTA ATGGTTCCGC ATTTGTCTAA AGAAGCTTTA
AATTGGTTTG TAATGAGTGA TTTTGCTAAA GAATTTTGGA AGCAACCGGA TAAATTACAT
AGAGAAAGCC AATTTTCAAG TCTCGTTAAT GCTAGTGAAT TATTTAATGA CTTTTCTGAT
CCATCTGCGA AGGTTTTAGT TCATGGAACG GTGGATGGAT ATTTTGAAGC AAAAGATGGT
CTTATTTTAT TCGATTACAA AACTGATTTT GTCGATAAAA CAAACGAAGA ACAAGCAATT
GAAAAAATTA AGCAAAAATA TACCGGACAG CTACGGCTAT ATGAACAAGC TCTAAATGAA
ATGAATAATG ATAAGAAGGT TATTGGAAAA TATTTGATTT TGCTTGACGC AAGGAAAGTG
GTCCCAGTAG ACTAG
|
|---|
| Protein sequence | MTNFTKEQDQ AINDAGKDIL VSASAGSGKT TVLVERVLKK ILSGTPVSSL LIITFTKAAA
REMKERIKQK ISDQLEIEPD NQFLRSQLLD VDTANISTID SFCLDVIRRF YYVIDLDPQF
SVLTDETQAE LLKERALREI EADYLEGDNQ DFQDFYDNFS GDRDAEGARN LLLQLYNTAT
TEPNYEKFLD NLPTCYEVGD NLIRSNLWQQ QIKPLLLKEI SDLKAEVEAL LAEPEINSSD
LVKVKENYDI FSNRLDSFWE SLNTDQPYNE IRANLMNCKF EKAVRKSKKW SDESIEVYQD
SQDLKLDLND QLKKIFASFF VVEEKEQIAV LQKSEKIVKT IVAAEKKLIQ KFSQLKREQN
LIDYSDMEQF AFSILTTDTS NAHIAQEYYQ EKFNEILIDE YQDVNALQEN IIKAIKKKGQ
NTLFMVGDVK QSIYGFRQAR PDLFLSKYHT YGKDNDSEKI ILADNFRSTK RVTKTVNDLF
NPILTTNFGG IDYKKEGQLQ FGASYYPSDL PTASEYIFTD KKQTQSAYED QYGDEMDFSE
VQMVIARIKQ LKAENFQVWD RRTQLKRPLE YSDIAIITRT RSDNLQVMQE FAKADLPLFV
TDAQNYFQTF ELIMIMNYLR LIDNPQQDIP LVAVMRSPLF NFKEPELAQI RVKTPAGNFY
TALTSFASVN SSLGKKCKEF LQQLETLRSF AATHRISELI WSIYEKTHLL EIVTGLPNGQ
QRRVNLESLY ERATSYESAG FKGLYQFISF IERMRKNQKD LAQPLLSDKA DNAVKLMTIH
ASKGLEFPIV FVMGLGHQYQ TRDLSGNFTI SQNELGLTIK EKNYRIDSLV KSLADVQKRQ
QMLEEEARIL YVGLTRAQQK LILVASVNEI ENKRKKWVSE LDQKKDIIPL VKKINAQSPL
DFLGPKLEQK HEFDQTIRDM TSALEEQDKL YYLKFNLDLE PEKIKDQNED SQEVNSNVNK
VVKELYNFKY PFEDATKTTA YQSVSEIKKA FNDPIDTELE NSRLISSSNR YLQPIDETPT
FLEGQKFTGA EIGTAMHLVL QYYNYEGNKD QENLDQEIDQ LVELGKLNSL MVPHLSKEAL
NWFVMSDFAK EFWKQPDKLH RESQFSSLVN ASELFNDFSD PSAKVLVHGT VDGYFEAKDG
LILFDYKTDF VDKTNEEQAI EKIKQKYTGQ LRLYEQALNE MNNDKKVIGK YLILLDARKV
VPVD
|
|---|
| |